View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_30 (Length: 332)
Name: NF1969_low_30
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 51454944 - 51454641
Alignment:
| Q |
19 |
tctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacatacatataatgccaaactcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51454944 |
tctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacatacatataatgccaaactcaa |
51454845 |
T |
|
| Q |
119 |
acatataaaaatgaacagagtgatgatcatgtaatgttaccttagcattactctccctgattttaagtttcttgtggacttgtggaacctcatttttggt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51454844 |
acatataaaaatgaacagagtgatgatcatgtaatgttaccttagcattactctccctgattttaagtttcttgaggacttgtggaacctcatttttggt |
51454745 |
T |
|
| Q |
219 |
ggtttccttctccgcctttatctttctgccgcgtctctttctcaccagttgaaatgatgaagagcccccggcatcattatcaccttcaccagcttcttcc |
318 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51454744 |
ggtttccttctccacctttctctttctgccgcgtctctttctcaccggttgaaatgatgaagagccgccggcatcattatcaccttcaccagcttcttcc |
51454645 |
T |
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| Q |
319 |
tttg |
322 |
Q |
| |
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|||| |
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| T |
51454644 |
tttg |
51454641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 51496432 - 51496350
Alignment:
| Q |
19 |
tctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacataca |
101 |
Q |
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||||||||||||||| ||||| |||||| ||||||| |||||||||||||||| ||||| |||||||| |||||||||||||| |
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| T |
51496432 |
tctctgacattgatggcacatcaaggattcctcttcgatccactgttgattgagaaacattaacagaatcacaattacataca |
51496350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 7996980 - 7996867
Alignment:
| Q |
18 |
atctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaac-agtaacagaaccacaattacat---acatataatgccaaa |
113 |
Q |
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|||| ||||||||||| | | |||||||| |||||||||||||| |||||||||||||| | |||||||| |||||||||| ||||||||| ||||| |
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| T |
7996980 |
atctttgacattgatggctcgttaaggattcctcttcaatccaccgttgattgaaaaacaattaacagaatgacaattacatgcaacatataattccaaa |
7996881 |
T |
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| Q |
114 |
ctcaaacatataaa |
127 |
Q |
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||||||||| |||| |
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| T |
7996880 |
ctcaaacatgtaaa |
7996867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 30208492 - 30208553
Alignment:
| Q |
40 |
taaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacataca |
101 |
Q |
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|||||| || |||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
30208492 |
taaggacccatcttcaatcccctattgattgagaaacagtaacagaaccacaattacataca |
30208553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 51479454 - 51479399
Alignment:
| Q |
19 |
tctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaa |
74 |
Q |
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||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||| |
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| T |
51479454 |
tctctgacattgatggcacattaaggactcctctgcaatccactgttaattgaaaa |
51479399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 43160133 - 43160047
Alignment:
| Q |
198 |
ttgtggaacctcatttttggtggtttccttctccgcctttatctttctgccgcgtctctttctcaccagttgaaatgatgaagagcc |
284 |
Q |
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||||||||||||||||| ||||||||||||||||| ||| |||||||||||| | |||||||| || ||||||||||||||||||| |
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| T |
43160133 |
ttgtggaacctcattttcggtggtttccttctccgattttctctttctgccgcatttctttctctccggttgaaatgatgaagagcc |
43160047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 27395564 - 27395515
Alignment:
| Q |
23 |
tgacattgatgacacattaaggatccctcttcaatccactgttgattgaa |
72 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
27395564 |
tgacattgatgacacattaaggactcctcttcaatccactgtttattgaa |
27395515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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