View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_31 (Length: 330)
Name: NF1969_low_31
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 119 - 315
Target Start/End: Complemental strand, 17701803 - 17701611
Alignment:
| Q |
119 |
tagaataaaacaaggaaatgagaataagggagtgatgaaaataaaccaacggtgacaaagtttaagtttgatgaaagaaagagaaagtaagataaaccct |
218 |
Q |
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| T |
17701803 |
tagaataaaacaaggaaatgagaataagggagtgatgaaaataaaccaacggtgacaaagttgaagtttgatgaaagaaagataaattaagataaaccct |
17701704 |
T |
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| Q |
219 |
agctattttttcggaaaagccctaactattattaccttataaacctcgcgcgttctctttgctgcttcacatccacgctttccatcgctttgtttct |
315 |
Q |
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| T |
17701703 |
agctatttcttcggaaaa-ccctagc---tattgctttataaacctcgcgcgatctgtttggtgcttcacatccacgctttccatcgctttgtttct |
17701611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 134 - 312
Target Start/End: Original strand, 17662294 - 17662469
Alignment:
| Q |
134 |
aaatgagaataagggagtgatgaaaataaaccaacggtgacaaagtttaagtttgatgaaagaaagagaaagtaagataaaccctagctattttttcgga |
233 |
Q |
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| T |
17662294 |
aaatgagaataagggagtgatgaaaataaactaaaggtaacaaagttgaagtttgatgaaagaaagagaaagtaagataaaccctagctatttcttcgga |
17662393 |
T |
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| Q |
234 |
aaagccctaactattattaccttataaacctcgcgcgttctctttgctgcttcacatccacgctttccatcgctttgtt |
312 |
Q |
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| T |
17662394 |
aaagtcctaac---tattactttataaacctcgcgcgttctctttcctgcttcacatccacgctttccatcgctttgtt |
17662469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 17661762 - 17661803
Alignment:
| Q |
32 |
aaaaaattgcaatgaacaaatatttgtttactaaaaatatat |
73 |
Q |
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| T |
17661762 |
aaaaaattacaatgaacaaatattagtttactaaaaatatat |
17661803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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