View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_39 (Length: 281)
Name: NF1969_low_39
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 42442555 - 42442819
Alignment:
| Q |
9 |
gaagcaaaggggtatcaggttgcggactttcatagataattgttgaatgctctttatcccttaaatcaaaaatcctaacagacccatcagcagaaaccga |
108 |
Q |
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| T |
42442555 |
gaagcaaaggggtatcaggttgcggactttcatagataattgttgaatgctctttatcccttaaatcaaaaatcctaacagacccatcagcagaaaccga |
42442654 |
T |
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| Q |
109 |
agcaaaaacccttgattccccccaagcaatatcataaacctctttatcatgcgcaattaactgcgtttcaacaacgcctctttcaatgtcccagatagta |
208 |
Q |
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| T |
42442655 |
agcaaaaacccttgattccccccaagcaatatcataaacctctttatcatgcgcaattaactgcgtttcaacaacgcctctttcaatgtcccagatagta |
42442754 |
T |
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| Q |
209 |
caagtagtgtcaatacttgaagttccaattcgtttgggctcaatttcattccaatctgatgatgt |
273 |
Q |
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| T |
42442755 |
caagtagtgtcaatacttgaagttccaattcgtttgggctcaatttcattccaatcaaatgatgt |
42442819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 32738353 - 32738573
Alignment:
| Q |
20 |
gtatcaggttgcggactttcatagataattgttgaatgctctttatcccttaaatcaaaaatcctaacagacccatcagcagaaaccgaagcaaaaaccc |
119 |
Q |
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|||||||||| | |||||| || || || || ||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||||| | |
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| T |
32738353 |
gtatcaggttcagaactttcgtaaattatagtagaatgttctttatcacgtaaatcaaaaaccctaacagacccatcagcagaaaccgatgcaaaaacac |
32738452 |
T |
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| Q |
120 |
ttgattccccccaagcaatatcataaacctctttatcatgcgcaattaactgcgtttcaacaacgcctctttcaatgtcccagatagtacaagtagtgtc |
219 |
Q |
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| T |
32738453 |
caacaccaccccaagctatatcataaacctctttatcatgggcaattaactgcgtatcaacggtttctttctcaatatcccaaatagtacacgttgtatc |
32738552 |
T |
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| Q |
220 |
aatacttgaagttccaattcg |
240 |
Q |
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|||||| ||||| |||||||| |
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| T |
32738553 |
aatactggaagtaccaattcg |
32738573 |
T |
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