View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_42 (Length: 265)
Name: NF1969_low_42
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 34848295 - 34848537
Alignment:
| Q |
19 |
gttcatctataattttaaattattgatttagaatgttaaatgaaattaacatctaacaagnnnnnnn-gatattttgttattttattcattaggagttcc |
117 |
Q |
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| T |
34848295 |
gttcatctataattttaaattattgatttagaatgttaaatgaaattaacatctaacaagttttttttgatattttgttattttattcattaggagttcc |
34848394 |
T |
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| Q |
118 |
atggacagaagaagagcatagaaaattccttgttggacttgagaagcttggaaaaggagattggaggggtatctctagaaactatgtgactacaagaaca |
217 |
Q |
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| T |
34848395 |
atggacagaagaagagcatagaaaattccttgttggacttgagaagcttggaaaaggagattggaggggtatctctagaaactatgtgactacaagaaca |
34848494 |
T |
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| Q |
218 |
ccaacacaagttgcaagccatgctcaaaagtatattcttcgac |
260 |
Q |
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| T |
34848495 |
ccaacacaagttgcaagccatgctcaaaagtattttattcgac |
34848537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 246
Target Start/End: Complemental strand, 42729582 - 42729445
Alignment:
| Q |
109 |
aggagttccatggacagaagaagagcatagaaaattccttgttggacttgagaagcttggaaaaggagattggaggggtatctctagaaactatgtgact |
208 |
Q |
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| T |
42729582 |
aggagttccatggacagaagaagagcacagaatgttccttgttggattagagaagctaggaaaaggagactggagaggaatctctaaaaactttgtcact |
42729483 |
T |
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| Q |
209 |
acaagaacaccaacacaagttgcaagccatgctcaaaa |
246 |
Q |
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| T |
42729482 |
tcaagaactcctacacaagttgctagccatgctcaaaa |
42729445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 44300607 - 44300691
Alignment:
| Q |
165 |
ttggaaaaggagattggaggggtatctctagaaactatgtgactacaagaacaccaacacaagttgcaagccatgctcaaaagta |
249 |
Q |
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| T |
44300607 |
ttggaaaaggtgattggagaggaatctcaaggaactatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagta |
44300691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 4386753 - 4386801
Alignment:
| Q |
202 |
tgtgactacaagaacaccaacacaagttgcaagccatgctcaaaagtat |
250 |
Q |
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| T |
4386753 |
tgtgacaacaaggatacaaacacaagttgcaagtcatgctcaaaagtat |
4386801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 29564910 - 29564948
Alignment:
| Q |
212 |
agaacaccaacacaagttgcaagccatgctcaaaagtat |
250 |
Q |
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| T |
29564910 |
agaacaccaactcaagtagcaagccatgctcaaaagtat |
29564948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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