View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_5 (Length: 513)
Name: NF1969_low_5
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 26 - 417
Target Start/End: Complemental strand, 49816221 - 49815830
Alignment:
| Q |
26 |
taaatatcagtacatttttataaaattataatattgggcataaattgtaattttgataaatgaaaactacagctgaagaagggtggaagtagacaaacaa |
125 |
Q |
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| T |
49816221 |
taaatatcagtacatttttataaaattataatattgggcataaattgtaattttgataaatgaaaactacagctgaag---ggtggaagtagacaaacaa |
49816125 |
T |
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| Q |
126 |
taattgatgcatatcactcactatgtttagggccaaggagacaaataaacaaggaatccttctttggtggtcacttcttatgctcaatttctatctctct |
225 |
Q |
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| T |
49816124 |
taattgatgcatatcactcactatgtttagggccaaggagacaaataaacaaggaatccttctttggtggtcacttcttatgctcaatttctatctctct |
49816025 |
T |
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| Q |
226 |
tgataattacatgtgattgcttttgttcatttcaacactgattgaagacttgtgctgctgggggcactaattttatttttgtatgctcatagcctaacta |
325 |
Q |
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| T |
49816024 |
tgataattacatgtgattgcttttgttcatttcaacactgattgaagacttgtgctgctgggggcactaattttatttttgtatgctcatagcctaacta |
49815925 |
T |
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| Q |
326 |
ttattaaccaactg-------tacaatataatggaccccctagctaattttgttatttttgttttcttgtgccacaaggacaaaacagttaagtcaaaa |
417 |
Q |
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| T |
49815924 |
ttattaaccaactgtacacagtacaatataatggacccc----ctaattttgttatttttgttttgttgtgccacaaggacaaaacagttaagtcaaaa |
49815830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 49815833 - 49815775
Alignment:
| Q |
440 |
aaaaagaaaccattgattaagatacccatcgatggttcatttttatatatgttttattt |
498 |
Q |
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| T |
49815833 |
aaaaagaaaccattgattaagatacccatcgatagttcatttttatatatgttttattt |
49815775 |
T |
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