View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1969_low_50 (Length: 250)
Name: NF1969_low_50
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_50 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 29472721 - 29472483
Alignment:
| Q |
2 |
tttgctcctttgaaatgagattctttagcacaattcatgaatctttgaaagaacatttacaacatacaaaatatctgatcttgtagttgtaagatgcatt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
29472721 |
tttgctcctttgaaatgagattctttagcacaattcatgaatctt-gaaagaacatttacagcatacaaaatatctggtcttgtagttgtaagatacatt |
29472623 |
T |
|
| Q |
102 |
aagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctctcctttggacacataggagtgctcatgcttt |
201 |
Q |
| |
|
|||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
29472622 |
aagcagccaattaaacttcggtagagtgtttcatccacttgttcttcttcaacatccttgcatagcttctcctttggacacataggagtgctcatgcttt |
29472523 |
T |
|
| Q |
202 |
tacagttctccatattgaatttctttaacatctcctttgc |
241 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
29472522 |
tacagtaatccatattgaatttctttaacatctcttttgc |
29472483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 20783151 - 20783389
Alignment:
| Q |
2 |
tttgctcctttgaaatgagattctttagcacaattcatgaatctttgaaagaacatttacaacatacaaaatatctgatcttgtagttgtaagatgcatt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
20783151 |
tttgctcctttgaaatgagattctttagcacagttcatgaatctt-gaaagaacatttacagcatacaaaatatctggtcttgtagttgtaagatacatt |
20783249 |
T |
|
| Q |
102 |
aagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctctcctttggacacataggagtgctcatgcttt |
201 |
Q |
| |
|
|||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
20783250 |
aagcagccaattaaacttcggtagagtgtttcatccacttgttcttcttcaacatccttgcatagcttctcctttggacacataggagtgctcatgcttt |
20783349 |
T |
|
| Q |
202 |
tacagttctccatattgaatttctttaacatctcctttgc |
241 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
20783350 |
tacagtaatccatattgaatttctttaacatctcttttgc |
20783389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8593305 - 8593069
Alignment:
| Q |
1 |
ctttgctcctttgaaatgagattctttagcacaattcatgaatctttgaaagaacatttacaacatacaaaatatctgatcttgtagttgtaagatgcat |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
8593305 |
ctttgctcctttgaaaagagattctttagcacaattcatgaatctt-gaaagaacatttacatcatacaaaatatctgatctagtagttgtaagatacat |
8593207 |
T |
|
| Q |
101 |
taagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctctcctttggacacataggagtgctcatgctt |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8593206 |
taagcagccaattaaactttggtatagtgtttcatccacttgttcttc---aacatccttgcatagcctctcctttggacacataggagtgctcatgctt |
8593110 |
T |
|
| Q |
201 |
ttacagttctccatattgaatttctttaacatctcctttgc |
241 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8593109 |
ttacggttctccatattgaatttctttaacatctcgtttgc |
8593069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 29871158 - 29870920
Alignment:
| Q |
2 |
tttgctcctttgaaatgagattctttagcacaattcatgaatctttgaaagaacatttacaacatacaaaatatctgatcttgtagttgtaagatgcatt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
29871158 |
tttgctcctttgaaatgagattctttagcacagttcatgaatctt-gaaagaacatttacagcatacaaaatatctggtcttgtagttgtaagatacatt |
29871060 |
T |
|
| Q |
102 |
aagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctctcctttggacacataggagtgctcatgcttt |
201 |
Q |
| |
|
|||||| | ||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
29871059 |
aagcagtcaattaaacttcggtagagtgtttcatccacttgttcttcttgaacatccttgcatagcttctcctttggacacataggagtgttcatgcttt |
29870960 |
T |
|
| Q |
202 |
tacagttctccatattgaatttctttaacatctcctttgc |
241 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
29870959 |
tacagtaatccatattgaatttctttaacatctcttttgc |
29870920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 21024332 - 21024570
Alignment:
| Q |
2 |
tttgctcctttgaaatgagattctttagcacaattcatgaatctttgaaagaacatttacaacatacaaaatatctgatcttgtagttgtaagatgcatt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
21024332 |
tttgctcctttgaaatgagattctttagcacagttcatgaatctt-gaaagaacatttacagcatacaaaatatctggtcttgtagttgtaagatacatt |
21024430 |
T |
|
| Q |
102 |
aagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctctcctttggacacataggagtgctcatgcttt |
201 |
Q |
| |
|
|||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21024431 |
aagcagccaattaaacttcggtagagtgtttcatccacttgttcttcttcaacatccttgcatagcttctcctttggacacataggagtgctcatgcttt |
21024530 |
T |
|
| Q |
202 |
tacagttctccatattgaatttctttaacatctcctttgc |
241 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
21024531 |
tacagtaatccatattgaatttctttaacatctcttttgc |
21024570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 19968477 - 19968239
Alignment:
| Q |
2 |
tttgctcctttgaaatgagattctttagcacaattcatgaatctttgaaagaacatttacaacatacaaaatatctgatcttgtagttgtaagatgcatt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
19968477 |
tttgctcctttgaaatgagattctttagcacagttcatgaatctt-gaaagaacatttacagcatacaaaatatctggtcttgtagttgtaagatacatt |
19968379 |
T |
|
| Q |
102 |
aagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctctcctttggacacataggagtgctcatgcttt |
201 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19968378 |
aagcagccaattaaacttcggtagagtgtttcatccatttgttcttcttcaacatccttgcatagcttctcctttggacacataggagtgctcatgcttt |
19968279 |
T |
|
| Q |
202 |
tacagttctccatattgaatttctttaacatctcctttgc |
241 |
Q |
| |
|
|||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
19968278 |
tacaataatccatattgaatttctttaacatctcttttgc |
19968239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 6367636 - 6367787
Alignment:
| Q |
6 |
ctcctttgaaatgagattctttagcacaattcatgaatctttgaaagaacatttacaacatacaaaatatctgatcttgtagttgtaagatgcattaagc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||| |
|
|
| T |
6367636 |
ctcctttgaaatgagattctttagcacaattcatgaatctt-gaaagaacatttacaacatacgaaatatttggtcttgtagttgtaagatacattaagc |
6367734 |
T |
|
| Q |
106 |
agccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatcc |
158 |
Q |
| |
|
| || ||||||||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
6367735 |
atccaattaaacttcggttgagtgtttcatccacgtgttcttcttcaacatcc |
6367787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 26054337 - 26054099
Alignment:
| Q |
2 |
tttgctcctttgaaatgagattctttagcacaattcatgaatctttgaaagaacatttacaacatacaaaatatctgatcttgtagttgtaagatgcatt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
26054337 |
tttgctcctttgaaatgagattctttagcacaattcatgaatctt-gaaagaacatttacagcataaaaaatatctggtcttgtagttgtaagatacatt |
26054239 |
T |
|
| Q |
102 |
aagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctctcctttggacacataggagtgctcatgcttt |
201 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26054238 |
aagcagccaattaaacttcagtaaagtgtttcaaccacttgttcttcttcaacatccttgcatagcttctcctttggacacataggagtgctcatgcttt |
26054139 |
T |
|
| Q |
202 |
tacagttctccatattgaatttctttaacatctcctttgc |
241 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
26054138 |
tacagtaatccatattgaatttctttaacatctcttttgc |
26054099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 26074390 - 26074152
Alignment:
| Q |
2 |
tttgctcctttgaaatgagattctttagcacaattcatgaatctttgaaagaacatttacaacatacaaaatatctgatcttgtagttgtaagatgcatt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
26074390 |
tttgctcctttgaaatgagattctttagcacaattcatgaatctt-gaaagaacatttacagcatataaaatatctggtcttgtagttgtaagatacatt |
26074292 |
T |
|
| Q |
102 |
aagcagccgattaaactttggtatagtgtttcatccacttgttcttcttcaacatccttgcatagcctctcctttggacacataggagtgctcatgcttt |
201 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
26074291 |
aagcagccaattaaacttccgtaaagtgtttcacccacttgttcttcttcaacatccttgcatagcttctcctttggacacgtaggagtgctcatgcttt |
26074192 |
T |
|
| Q |
202 |
tacagttctccatattgaatttctttaacatctcctttgc |
241 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
26074191 |
tacagtaatccatattgaatttctttaacatctcttttgc |
26074152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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