View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_53 (Length: 249)
Name: NF1969_low_53
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 57 - 232
Target Start/End: Complemental strand, 11643465 - 11643289
Alignment:
| Q |
57 |
actatatatgataaaacaaaaccagtaccaccagccaaacaattgtgaagtaatagccatggaaattgacnnnnnnn-----ccataaattgaacacaca |
151 |
Q |
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| T |
11643465 |
actaaatatgataaaacaaaaccagtacca---gccaaacaattgtgaagtaatagccatggaaattgacaactacaaaaaaccataaattgaacacaca |
11643369 |
T |
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| Q |
152 |
tttttattctgaaatctcaaaagagttcacaaaaacagattatgctccctgatttatttggttgaaacttaacataaattt |
232 |
Q |
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| T |
11643368 |
tttttattctgaaatctcaaa-gagttcacaaaaacagattatgctccctgatttatttggttgaaacttaacataaattt |
11643289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 11624897 - 11624800
Alignment:
| Q |
134 |
ccataaattgaacacacatttttattctgaaatctcaaaagagttcacaaaaacagattatgctccctgatttatttggttgaaacttaacataaattt |
232 |
Q |
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| T |
11624897 |
ccataaattgaacatacatttttattctgaaatctcaaa-gagttcacaaaaacagattatgctccatgatttatttggttgaaacttaacataaattt |
11624800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 11602589 - 11602685
Alignment:
| Q |
134 |
ccataaattgaacac-acatttttattctgaaatctcaaaagagttcacaaaaacagattatgctccctgatttatttggttgaaacttaacataaattt |
232 |
Q |
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| T |
11602589 |
ccataaattgaacaatacatttttattctgca-tctcaaa-gagttcataaaa-catattatactcccttatttatttggttgaaacttaacataaattt |
11602685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 8293895 - 8293846
Alignment:
| Q |
15 |
atattcatattacacacataaaactaatagcagtaactcataactatata |
64 |
Q |
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| T |
8293895 |
atattcatattacacacataaaactaatagcagtaactcataactatata |
8293846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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