View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_54 (Length: 249)
Name: NF1969_low_54
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 22634380 - 22634159
Alignment:
| Q |
1 |
aaatatagaaattttatattggaaaattgtgtattcaactttttcaaatgttgtgtttccaatgtaatagatgtacatttgatttctttaataaatgtct |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| |
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| T |
22634380 |
aaatatagaaattttacattggaaaattgtgtattcaactttttcaaatgt--------------aaaaggtgtacatttgatttctttaataaatgtct |
22634295 |
T |
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| Q |
101 |
ttaatacactcgttagcaagaccctcaatgattttgcaatcacactatgtacccttaaatatatatgtgactcaaaatgtgtaacaaaattatgctcaac |
200 |
Q |
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||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22634294 |
ttaatacactcgttatcaagaccctgaacgattttgcaatcacactatgtacccttaaatatatatgtgactcaaaatgtgtaacaaaattatgctcaac |
22634195 |
T |
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| Q |
201 |
acaatttcaaacttcacaattgctacttgctagttc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
22634194 |
acaatttcaaacttcacaattgctacttgctagttc |
22634159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45418851 - 45418894
Alignment:
| Q |
1 |
aaatatagaaattttatattggaaaattgtgtattcaacttttt |
44 |
Q |
| |
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||||||| ||||||| | |||||||||||||||||||||||||| |
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| T |
45418851 |
aaatatataaattttgtgttggaaaattgtgtattcaacttttt |
45418894 |
T |
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