View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_55 (Length: 248)
Name: NF1969_low_55
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_55 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 126 - 248
Target Start/End: Original strand, 32731200 - 32731320
Alignment:
| Q |
126 |
agatataggttctcttgttgatgggtacagttctattttttaatgaaggtgtatcaattagaatgacccttcactgatccctaggtatctgtttaagatt |
225 |
Q |
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| T |
32731200 |
agatataggttctcttgttgatgggtacagttctattttttaatgaaggtgtatcaattagaatgacccttcactgat--caaggtatctgtttaagatt |
32731297 |
T |
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| Q |
226 |
caatactcgtcactagactaatt |
248 |
Q |
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| T |
32731298 |
caatactcgtcactagactaatt |
32731320 |
T |
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Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 32731110 - 32731213
Alignment:
| Q |
6 |
agataatactataaaagaataatatgatcattacattagatatttttcattaacaatatcgagatttttcattaatcgaagagctgtgttagatataggt |
105 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32731110 |
agatactactataaaagaataatatgatcaatacattagatatttttcattaacaatatcgagatttttcattaatcgaagagctgtgttagatataggt |
32731209 |
T |
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| Q |
106 |
tctc |
109 |
Q |
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|||| |
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| T |
32731210 |
tctc |
32731213 |
T |
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