View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_56 (Length: 247)
Name: NF1969_low_56
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_56 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 32462419 - 32462190
Alignment:
| Q |
18 |
attatcagtgtttattacaattaaaagctactaccaactgtatatgtctatgttatttcatactcatgtgctaaatgttactggtgcggtgctgattata |
117 |
Q |
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| T |
32462419 |
attatcagtgtttattacaattaaaagctactaccaactgtatatgtctatgttatttcatactcatatgctaaatgttactggtgcggtgctgattata |
32462320 |
T |
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| Q |
118 |
aattatgttgatacaatgtatttttggtacgaaattaaattttgaatgccgccgtttttaaatgggaaaatttattactataggagagacagaaactata |
217 |
Q |
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| T |
32462319 |
aattatgttgatacaatgtatttttggtacgaaattaaattttgaatgccgccgtttttaaatgggaaaatttattactatatgagagacagaaactata |
32462220 |
T |
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| Q |
218 |
accattgtctactgttggaccataacattt |
247 |
Q |
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| T |
32462219 |
accattgtctaatgttggaccataacattt |
32462190 |
T |
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