View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_61 (Length: 241)
Name: NF1969_low_61
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 33942109 - 33941909
Alignment:
| Q |
3 |
tcaattaaatatttgttagacattcctgctcagcttaggtttcctttagttatggagttgcttactccatgtttgattgtggattgttttgtannnnnnn |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33942109 |
tcaattaaatatttgttagacattcctgctcagcttaggtttcctttagttatggagttgcttactccatgtttgattgtggattgttttgta-tttttt |
33942011 |
T |
|
| Q |
103 |
ctttagcttaagcctctttaattccnnnnnnnttcagatccaaac-aagattgcccgttgtttcactttgaagaagtagaaaatgttttgaattatatat |
201 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33942010 |
ctttagcttaagcctctttaattccaaaataattcagatccaaacaaagattgcccattgtttcactttgaagaagtagaaaatgttttgaattatatat |
33941911 |
T |
|
| Q |
202 |
at |
203 |
Q |
| |
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|| |
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|
| T |
33941910 |
at |
33941909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40271910 - 40271958
Alignment:
| Q |
1 |
tttcaattaaatatttgttagacattcctgctcagcttaggtttccttt |
49 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40271910 |
tttcaattaaatatttgtaagacattcctgctcagcttaggtttccttt |
40271958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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