View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_65 (Length: 236)
Name: NF1969_low_65
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 51739284 - 51739064
Alignment:
| Q |
1 |
aatcaattaccagaatttgtgcaacgggtccaggttgacctagggtcctaaggacaacgttgaagaagtgtgagacaacaagaatacatgacacttgcat |
100 |
Q |
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| T |
51739284 |
aatcaattaccagaatttgtgcaacgggtccaggttgacctagggtcctaaggacaacgttgaagaagtgtgagacaacaagaatacatgacacttgcat |
51739185 |
T |
|
| Q |
101 |
gcccattgagtatagagggttaactagttctttattacaaaacattttgtgtgtggcatccattgtgtgcatttaatgtgtttgtcaaaacttcaatcaa |
200 |
Q |
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| T |
51739184 |
gcccattgagtatagagggttaactagttctttattacaaaacattttgtgggtggcatccattgtgtggatttaatgtttttgtcaaaac-tcaatcaa |
51739086 |
T |
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| Q |
201 |
taaattagacaaagaaaggaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
51739085 |
taaattagacaaagaaaggaat |
51739064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 10199709 - 10199570
Alignment:
| Q |
6 |
attaccagaatttgtgcaacgggtccaggttgacctagggtcctaaggacaacgttgaagaagtgtgagacaacaagaatacatgacacttgcatgccca |
105 |
Q |
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| T |
10199709 |
attaccagaatttgtgcaatgggtccaggttggcccatagtcctaagaacaacgttgaagaagtgtgacacaacaagaatgcatgacacttgcataccca |
10199610 |
T |
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| Q |
106 |
ttgagtatagagggttaactagttctttattacaaaacat |
145 |
Q |
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| T |
10199609 |
tagaacttagagggttaacaagatcatcgttacaaaacat |
10199570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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