View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1969_low_69 (Length: 233)
Name: NF1969_low_69
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_69 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 28495773 - 28495577
Alignment:
| Q |
18 |
catggatacaattagagatgaagaaaggccacttcatatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaattagccaaactt |
117 |
Q |
| |
|
|||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
28495773 |
catggatacaatcagagatgaagaaaaggcacttcatatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaactagccaagctt |
28495674 |
T |
|
| Q |
118 |
atagcacaaaagggtcactaagtaagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaatgttgttcctctcatcaaat |
214 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28495673 |
atagcacaaaagggtcaccaagtaagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaatgttgctcctctcatcaaat |
28495577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 28508316 - 28508120
Alignment:
| Q |
18 |
catggatacaattagagatgaagaaaggccacttcatatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaattagccaaactt |
117 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
28508316 |
catggataccattagagatgaagaaaaggcacttcacatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaactagccaagctt |
28508217 |
T |
|
| Q |
118 |
atagcacaaaagggtcactaagtaagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaatgttgttcctctcatcaaat |
214 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28508216 |
atagcacaaaagggtcacaaagttagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaatgttgctcctctcatcaaat |
28508120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 34 - 214
Target Start/End: Complemental strand, 28492438 - 28492258
Alignment:
| Q |
34 |
gatgaagaaaggccacttcatatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaattagccaaacttatagcacaaaagggtc |
133 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||| |
|
|
| T |
28492438 |
gatgaagaaaaggcacttcacatagtaatgtttccatggctagcctttggtcacatgatcccataccttgaagtggccaaacttatagcacaaaagggtc |
28492339 |
T |
|
| Q |
134 |
actaagtaagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaatgttgttcctctcatcaaat |
214 |
Q |
| |
|
|| |||| || ||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| |
|
|
| T |
28492338 |
accaagttagctatgtttctaccccaagaaacatacaacgcctccctcaactaccaccaaacgttgctcctctcatcaaat |
28492258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University