View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_7 (Length: 474)
Name: NF1969_low_7
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Complemental strand, 25883679 - 25883236
Alignment:
| Q |
20 |
gcgtgaagggagagtagtgcaaagtggaaagtatgatgaacttctcaaagcaggtctagattttggtgcacttctggaggctcatgaatcctcaatgaag |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883679 |
gcgtgaagggagagtagtgcaaagtggaaagtatgatgaacttctcaaagcaggtctagattttggtgcacttctggaggctcatgaatcctcaatgaag |
25883580 |
T |
|
| Q |
120 |
atggcagaaacaagtgataaaactagtaatgattcagctcaatctcaaaaactagctcgcatcccatcgaaagaaaaagaaagtgggggtgaaaagcagt |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
25883579 |
atggcagaaacaagtgataaaactagtaatgattcagctcaatctcaaaaactagctcgcatcccatcgaaagaaaaagaaagcgggggcgaaaagcagt |
25883480 |
T |
|
| Q |
220 |
cttcttctgaagatcaatcgaagtctgaaaaaactgcagcaaagctcattgaagatgaggaaagagaaactggacaagtgaaccttaatgtatacaaaca |
319 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883479 |
cttcttctgaagatcaatccaagtctgaaaaaactgcagcaaagctcattgaagatgaggaaagagaaactggacaagtgaaccttaatgtatacaaaca |
25883380 |
T |
|
| Q |
320 |
atatttcacggaagcatttggatggtggggaatagcactcgtgctagcaatgtcggtggcttgggttgcgtcatttttggctggtgattattggctagca |
419 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25883379 |
atatttcacagaagcatttggatggtggggaatagcactcgtgctagcaatgtcggtggcttgggttgcatcatttttggctggtgattattggctagca |
25883280 |
T |
|
| Q |
420 |
tttgcaactgcagatgattctagcattctttcttctactttcat |
463 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883279 |
tttgcaactgcagatgattctagcattctttcttctactttcat |
25883236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 463
Target Start/End: Complemental strand, 14318259 - 14317819
Alignment:
| Q |
20 |
gcgtgaagggagagtagtgcaaagtggaaagtatgatgaacttctcaaagcaggtctagattttggtgcacttctggaggctcatgaatcctcaatgaag |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | |
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| T |
14318259 |
gcgtgaagggagagtagtacaaagtggaaagtatgatgaacttctcaaagcaggtctagattttggtgcacttgtggcagctcatgaatcctcaatggaa |
14318160 |
T |
|
| Q |
120 |
atggcagaaacaagtgataaaactagtaatgattcagctcaatctcaaaaactagctcgcatcccatcgaaagaaaaagaaagtgggggtgaaaagcagt |
219 |
Q |
| |
|
|| ||||||||||||||||||||||| |||| || ||||| |||| |||| ||||||||||| | ||||||||||||||||| | | |||||||||| |
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| T |
14318159 |
attgcagaaacaagtgataaaactagcgatgaatctgctcagtctccaaaattagctcgcatcgcttcgaaagaaaaagaaagcgcgctagaaaagcagt |
14318060 |
T |
|
| Q |
220 |
cttcttctgaagatcaatcgaagtctgaaaaaactgcagcaaagctcattgaagatgaggaaagagaaactggacaagtgaaccttaatgtatacaaaca |
319 |
Q |
| |
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||||| || |||| || | |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||||| |
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| T |
14318059 |
cttct-ct--agataaacctaagtctgataaaactgcagcaaagctcattgaagacgaggaaagagaaactggacgtgtaaaccttaaagtatacaaaca |
14317963 |
T |
|
| Q |
320 |
atatttcacggaagcatttggatggtggggaatagcactcgtgctagcaatgtcggtggcttgggttgcgtcatttttggctggtgattattggctagca |
419 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| || |||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
14317962 |
ttatttcacagaagcatttggatggtggggaatagcactcatggtagcaatgtcagtggcttggatgctgtcatttttggctggtgattattggctagca |
14317863 |
T |
|
| Q |
420 |
tttgcaactgcagatgattctagcattctttcttctactttcat |
463 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||| |||||||| |
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|
| T |
14317862 |
attgctactgcagatgattctggcattccttctttcactttcat |
14317819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 24 - 440
Target Start/End: Complemental strand, 14301832 - 14301422
Alignment:
| Q |
24 |
gaagggagagtagtgcaaagtggaaagtatgatgaacttctcaaagcaggtctagattttggtgcacttctggaggctcatgaatcctcaatgaagatgg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | | |||||||||||||||||| | || | |
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|
| T |
14301832 |
gaagggagagtagtgcaaagtggaaagtatgatgaacttctcaaagcaggcctagattttggtgcacttgtagctgctcatgaatcctcaatggaaatag |
14301733 |
T |
|
| Q |
124 |
cagaaacaagtgataaaactagtaatgattcagctcaatctcaaaaactagctcgcatcccatcgaaagaaaaagaaagtgggggtgaaaagcagtcttc |
223 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| |||||||||| |||||| || ||| || || ||||||||||||| | || ||||| ||| || |
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| T |
14301732 |
cagaaacaagtgagaaaactagtgatgattccgctcaatctccaaaactcgcccgcgtcatttcaaaagaaaaagaaa---gcggagaaaaacag---tc |
14301639 |
T |
|
| Q |
224 |
ttctgaagatcaatcgaagtctgaaaaaactgcagcaaagctcattgaagatgaggaaagagaaactggacaagtgaaccttaatgtatacaaacaatat |
323 |
Q |
| |
|
|||| || |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||||||| |
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|
| T |
14301638 |
ttctcaaattcaatccaagtctgataaaactgcagcaaagctcattgaagatgaggaaagagaaattggacaagtgaatcttgaagtatacaaacaatat |
14301539 |
T |
|
| Q |
324 |
ttcacggaagcatttggatggtggggaatagcactcgtgctagcaatgtcggtggcttgggttgcgtcatttttggctggtgattattggctagcatttg |
423 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| | || ||||| | || || | |||| | ||||||||||| | ||||||||||||||||| ||| |
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| T |
14301538 |
ttcacagaagcatttggatggtggggagtagcattaatggtagcagtatcagtagtttggatgctgtcatttttggttagtgattattggctagcaattg |
14301439 |
T |
|
| Q |
424 |
caactgcagatgattct |
440 |
Q |
| |
|
| ||||||||||||||| |
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|
| T |
14301438 |
ctactgcagatgattct |
14301422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 24 - 463
Target Start/End: Complemental strand, 14280069 - 14279645
Alignment:
| Q |
24 |
gaagggagagtagtgcaaagtggaaagtatgatgaacttctcaaagcaggtctagattttggtgcacttctggaggctcatgaatcctcaatgaagatgg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||| | || | |
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| T |
14280069 |
gaagggagagtagtgcaaagtggaaagtatgatgaacttctcaaagcaggcctagattttggtgcactcgtggcagctcatgaatcctcgatggaaattg |
14279970 |
T |
|
| Q |
124 |
cagaaacaagtgataaaactagtaatgattcagctcaatctcaaaaactagctcgcatcccatcgaaagaaaaagaaagtgggggtgaaaagcagtcttc |
223 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||| |||||| || | ||| | |||| |||||||||||| | || |||||| ||||||| |
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|
| T |
14279969 |
cacaaacaagtgat------------gattctgctcaatctccaaaactggcccacatttcttcgagagaaaaagaaagcgcggtagaaaagaagtcttc |
14279882 |
T |
|
| Q |
224 |
ttctgaagatcaatcgaagtctgaaaaaactgcagcaaagctcattgaagatgaggaaagagaaactggacaagtgaaccttaatgtatacaaacaatat |
323 |
Q |
| |
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| ||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||| |
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|
| T |
14279881 |
tc---aagataaatctaagtctaataaaactgcagcaaagctcattgaagatgaggaaagagaaactggacgtgtaaaccttaaagtatacaaacattat |
14279785 |
T |
|
| Q |
324 |
ttcacggaagcatttggatggtggggaatagcactcgtgctagcaatgtcggtggcttgggttgcgtcatttttggctggtgattattggctagcatttg |
423 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| || |||||||||| |||||||| | |||| ||||| ||| ||||||||||||||| || |
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|
| T |
14279784 |
ttcacagaagcatttggatggtggggaatagcactcatggtagcaatgtcagtggcttgtatgctgtcaactttggttggcgattattggctagcaactg |
14279685 |
T |
|
| Q |
424 |
caactgcagatgattctagcattctttcttctactttcat |
463 |
Q |
| |
|
||||||||||||||||| | |||| |||||| |||||||| |
|
|
| T |
14279684 |
caactgcagatgattctggaattccttcttccactttcat |
14279645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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