View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_9 (Length: 454)
Name: NF1969_low_9
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_9 |
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| [»] scaffold0635 (1 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 1808 - 1435
Alignment:
| Q |
13 |
aatataagaataaaaaatttgagccaggaggtttaattaattttagacaaaattttgagtaatctgcaaaaggttttcaattctatcttggttgagttaa |
112 |
Q |
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| T |
1808 |
aatataagaataaaa--tttgagccaggaggtttaattaattttagacaaaattttgagtaatctgcaaaaggttttcaattctatctcggttgagttaa |
1711 |
T |
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| Q |
113 |
agcaaaaacaagaagtaaaatagtgatatcttgannnnnnnnnnaatcattcaattctaggaagataatttagttacttaatcttcaatcaatttatttt |
212 |
Q |
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| T |
1710 |
agcaaaaacaaaaagtaaaatagtgatatcttgatttttttt--aatcatccaattctaggaagataatttgtttacttaatcttcaatcaatttattgt |
1613 |
T |
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| Q |
213 |
taattgcattatcgtcctttattttcgctgaaacatgatttttacccttccatttctaaatatgagattttagtctactagctaatttaatattgtattg |
312 |
Q |
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| T |
1612 |
taattgcattatcatctcttattttcacagaaacatgatttttacccttccatttctaaatatgagattttagtctcttatctaattttatattgtattg |
1513 |
T |
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| Q |
313 |
tttgaaaaatagtgttgtagattacatgttgattagggtgggttatgacacaaaatcttgacagcaaaatatggggta |
390 |
Q |
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| T |
1512 |
ctggaaaaatggtgttggagattacttgttgattagggtgggttatgacataaagtcttagcagcaaaatatggggta |
1435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 390
Target Start/End: Original strand, 10106976 - 10107349
Alignment:
| Q |
13 |
aatataagaataaaaaatttgagccaggaggtttaattaattttagacaaaattttgagtaatctgcaaaaggttttcaattctatcttggttgagttaa |
112 |
Q |
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| T |
10106976 |
aatataagaataaaa--tttgagccaggaggtttaattaattttagacaaaattttgagtaatctgcaaaaggttttcaattctatctcggttgagttaa |
10107073 |
T |
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| Q |
113 |
agcaaaaacaagaagtaaaatagtgatatcttgannnnnnnnnnaatcattcaattctaggaagataatttagttacttaatcttcaatcaatttatttt |
212 |
Q |
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| T |
10107074 |
agcaaaaacaaaaagtaaaatagtgatatcttgatttttttt--aatcatccaattctaggaagataatttgtttacttaatcttcaatcaatttattgt |
10107171 |
T |
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| Q |
213 |
taattgcattatcgtcctttattttcgctgaaacatgatttttacccttccatttctaaatatgagattttagtctactagctaatttaatattgtattg |
312 |
Q |
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| T |
10107172 |
taattgcattatcatctcttattttcacagaaacatgatttttacccttccatttctaaatatgagattttagtctcttatctaattttatattgtattg |
10107271 |
T |
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| Q |
313 |
tttgaaaaatagtgttgtagattacatgttgattagggtgggttatgacacaaaatcttgacagcaaaatatggggta |
390 |
Q |
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| T |
10107272 |
ctggaaaaatggtgttggagattacttgttgattagggtgggttatgacataaagtcttagcagcaaaatatggggta |
10107349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 298 - 409
Target Start/End: Complemental strand, 27246 - 27135
Alignment:
| Q |
298 |
tttaatattgtattgtttgaaaaatagtgttgtagattacatgttgattagggtgggttatgacacaaaatcttgacagcaaaatatggggtagagggtg |
397 |
Q |
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|||||||||||| |||| | ||||| | ||| | ||||||||||| | | |||| |||||| ||||||| |||| ||||||||||||| ||||||||| |
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| T |
27246 |
tttaatattgtactgttgggaaaatggatttggatattacatgttggtcatggtgcgttatggtacaaaattttgatagcaaaatatgggatagagggtg |
27147 |
T |
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| Q |
398 |
gtcgtattagag |
409 |
Q |
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| T |
27146 |
gtcgtattagag |
27135 |
T |
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