View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19700_high_1 (Length: 680)
Name: NF19700_high_1
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 176 - 419
Target Start/End: Complemental strand, 31583950 - 31583707
Alignment:
| Q |
176 |
catcattcaacatcaaattagtaaaatctatgtttaggtaatcctaacttatttctatgaaaatccttcgtaataacatttggaagattgccctaccgag |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31583950 |
catcattcaacatcaaattagtaaaatctatgtttaggtaatcctaacttatttctatgaaaatccttcgtaataacatttggaagattgccctaccgag |
31583851 |
T |
|
| Q |
276 |
tgaaactaataacaaataaaccagtattagcaattttatgagtacaacaatttcctttcctaaaaatattgaagatcatgtaggacatgtttctaggcaa |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31583850 |
tgaaactaataacaaataaaccagtattagcaattttatgagtacaacaatttcctttcctaaaaatattgaagatcatgtaggacatgtttctaggcaa |
31583751 |
T |
|
| Q |
376 |
atgaaaacaatcctctacttcaatagaaagcataacactcataa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31583750 |
atgaaaacaatcctctacttcaatagaaagcataacactcataa |
31583707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 31584110 - 31584007
Alignment:
| Q |
16 |
atcattaataaaagtaaaaaatgcacaaacttagatgaactaaaccaaacccaaagcaatacacaaggtgaatgctaatctctacttcattagaaacctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31584110 |
atcattaataaaagtaaaaaatgcacaaacttagatgaactaaaccaaacccaaagcaatacacaaggtgaatgctaatctctacttcattagaaacctt |
31584011 |
T |
|
| Q |
116 |
cccc |
119 |
Q |
| |
|
|||| |
|
|
| T |
31584010 |
cccc |
31584007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 564 - 644
Target Start/End: Complemental strand, 31583705 - 31583625
Alignment:
| Q |
564 |
ttaatgtatcaaactctatattttatagtttcctagaaacttcacaaagtatggaaattatgatgcattgaaacatgaaat |
644 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31583705 |
ttaatgtatcaaactctacattttatagcttcctagaaacttcacaaagtatggaaattatgatgcattgaaatatgaaat |
31583625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 589 - 643
Target Start/End: Complemental strand, 31617022 - 31616967
Alignment:
| Q |
589 |
tagtttcctagaaacttcacaaagtatggaaa-ttatgatgcattgaaacatgaaa |
643 |
Q |
| |
|
||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
31617022 |
tagtttcctagaaacttcacaaagtgtagaaaattatgatgcattgaaacatgaaa |
31616967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University