View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19700_high_2 (Length: 574)
Name: NF19700_high_2
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 11 - 556
Target Start/End: Complemental strand, 1782264 - 1781719
Alignment:
| Q |
11 |
cacagatccacccttttcttgtgtttttctcactttcagatgcgaggaggatgaagtgggggaaaaactacttgatgttaattgtgaaatttgattaaac |
110 |
Q |
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| T |
1782264 |
cacagatcaaccctcttcttgtgtttttctcaccttcagatgcgaggaggatgaagtgggggaaaaactacttgatgttaattgtgaaatttaattaaac |
1782165 |
T |
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| Q |
111 |
ttatgacctggtggattggacttttttggactatatgctgggaaggtttggttttggattaaatggatgaagacttgtatttgtacaaataatttgttag |
210 |
Q |
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| T |
1782164 |
ttatgacctggtggattggacttttttggactatatgctgggaaggtttggttttggattaaatggatgaagacttgtatttgtacaaataatttgttag |
1782065 |
T |
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| Q |
211 |
ttttggtaattggttgtcctataggggaaatctcgacaaagaggcctaaacaaggagacccccttgctactttattatttctcttggtagtgaaaagttt |
310 |
Q |
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| T |
1782064 |
ttttggtaattggttgtcctataggggaaatctcgacaaagaggcctaaacaaggagacccccttgctactttattatttctcttggtagtgaaaagttt |
1781965 |
T |
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| Q |
311 |
tgagggtctcacgaagtcagcatgtaggatgtacatgttcaaaggttatgtgatgggagatgggtgtatgaaggtatctcactgtcaatatcgggatgat |
410 |
Q |
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| T |
1781964 |
tgagggtctcacgaagtcagcatgtaggatgtacatgttcaaaggttatgtgatgggagatgggtgtatgaaggtatctcactgtcaatatcgggatgat |
1781865 |
T |
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| Q |
411 |
accttgtgaattgaggaagcaactattgagaatttgtgggtaatgaaggctattttgagagcctttgaaataacatctggattaaaagtaaattttgcga |
510 |
Q |
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| T |
1781864 |
accttgtgaattgaggaagcaactattgagaatttgtgggtaatgaaggctattttgagagcctttgaaataacatctggattaaaagtaaattttgcga |
1781765 |
T |
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| Q |
511 |
aaagatgtcttatgcgtataaatggcaaataatcattattaaagat |
556 |
Q |
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| T |
1781764 |
aaagatgtcttatgcgtataaatggcaaataatcattattaaagat |
1781719 |
T |
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