View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19700_high_24 (Length: 243)
Name: NF19700_high_24
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 35450161 - 35450106
Alignment:
| Q |
176 |
ttataattactatgatcacttattaattaagttgttgcagcagttaatagattcat |
231 |
Q |
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| T |
35450161 |
ttataattactatgatcacttattaattaagttgttgcagcagttaatagattcat |
35450106 |
T |
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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 51576277 - 51576225
Alignment:
| Q |
88 |
tgttacatgttttaattaattttcaattcttgtttaattagtctcacattccc |
140 |
Q |
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| T |
51576277 |
tgttacatgttttaattaattttcaattcttgtttacttaatctcacattccc |
51576225 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 1864474 - 1864529
Alignment:
| Q |
82 |
cataactgttacatgttttaattaattttcaattcttgtttaattagtctcacatt |
137 |
Q |
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| T |
1864474 |
cataaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacatt |
1864529 |
T |
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