View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19700_high_4 (Length: 497)
Name: NF19700_high_4
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 30708557 - 30709047
Alignment:
| Q |
1 |
ctctactggtgatcgcactgacattacagtaacagatatgtttttgatt---catcagcggttaaagagtcagcccgtgttagcaggaaaacctccatac |
97 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30708557 |
ctctacaggtgatcacactgacattacagtaacagatatgtttttgattattcatcagtggttaaagagtcagcctgtgttagcaggaaaacctccatac |
30708656 |
T |
|
| Q |
98 |
catacacagaca----cacctaccatctacacaaacacagcaggccaaagaaaacatcgtcgtgaatcactttagtaaactcctttaaaaaatatcatgt |
193 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708657 |
catacacagacagacacacctaccatctacacaaacacagcaggccaaagaaaacatcgtcgtgaatcactttagtaaactcctttaaaaaatatcatgt |
30708756 |
T |
|
| Q |
194 |
ttgaacaaatgaagacataaatgatacattcaagtttacgtttgcacgcagcatatatggttccagaacctatgcttgttagagatgcaacggaggaatt |
293 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708757 |
ttgaacaaatga---cataaatgatacattcaagtttacgtttgcacgcagcatatatggttccagaacctatgcttgttagagatgcaacggaggaatt |
30708853 |
T |
|
| Q |
294 |
gaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggcatagatggtatgcagaatccaagttagtaatcatcacttttgaa |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708854 |
gaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggcatagatggtatgcagaatccaagttagtaatcatcacttttgag |
30708953 |
T |
|
| Q |
394 |
taatcttcggttctttactcacttgttggcttcctcacatttgtgtcagcggctcacaaaattataatatgcacagtcgaacacagttcagtat |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708954 |
taatcttcggttctttactcacttgttggcttcctcacatttgtgtcagcggctcacaaaattataatatgcacagtcgaacacagttcagtat |
30709047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 187 - 437
Target Start/End: Original strand, 30699278 - 30699522
Alignment:
| Q |
187 |
atcatgtttgaacaaatgaagacataaatgatacattcaagtttacgtttgcacgcagcatatatggttccagaacctatgcttgttagagatgcaacgg |
286 |
Q |
| |
|
||||||||| | ||||||||||||||| |||||||| | |||| ||| || || || ||||| ||||||||||||| | ||| ||||||||||| | |
|
|
| T |
30699278 |
atcatgtttaagcaaatgaagacataa-tgatacatatag--ttacctttacatgctgcgtatatcgttccagaacctacgtgtgtcagagatgcaacag |
30699374 |
T |
|
| Q |
287 |
aggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggcatagatggtatgcagaatccaagttagtaatcatcac |
386 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
30699375 |
aggaattgaatacaatgcttc---catttccagattctttaagaagaggatatgtcagttggcatagatggtatgcagaatccaagttaatagtcatcaa |
30699471 |
T |
|
| Q |
387 |
ttttgaataatcttcggttctttactcacttgttggcttcctcacatttgt |
437 |
Q |
| |
|
||||||||||||||| ||| | |||||| ||||||| |||||||||||||| |
|
|
| T |
30699472 |
ttttgaataatcttctgttgtatactcaattgttggtttcctcacatttgt |
30699522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 244 - 437
Target Start/End: Original strand, 30706167 - 30706357
Alignment:
| Q |
244 |
gcatatatggttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtca |
343 |
Q |
| |
|
||||| ||| |||||| ||||| ||| ||||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
30706167 |
gcatagatgcttccagtacctacacttattagagatgcaacagaggaaatgaacacaatgcttc---catttccagattctttaagaagaggatatgcta |
30706263 |
T |
|
| Q |
344 |
gttggcatagatggtatgcagaatccaagttagtaatcatcacttttgaataatcttcggttctttactcacttgttggcttcctcacatttgt |
437 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | |||||| |||||||||||||||||||||| |
|
|
| T |
30706264 |
gttgacatagatggtatgcagaatccaagttagtagtcatcacttttgaataatcttcggctgtatactcaattgttggcttcctcacatttgt |
30706357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 244 - 437
Target Start/End: Original strand, 30719150 - 30719340
Alignment:
| Q |
244 |
gcatatatggttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtca |
343 |
Q |
| |
|
||||| ||| |||||| ||||| |||||| ||||| |||| |||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30719150 |
gcatagatgcttccagtacctacgcttgtcagagacccaacagaggaaatgaaaacaatgcttc---catttccagattctttaagaagaggatatgtca |
30719246 |
T |
|
| Q |
344 |
gttggcatagatggtatgcagaatccaagttagtaatcatcacttttgaataatcttcggttctttactcacttgttggcttcctcacatttgt |
437 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
30719247 |
gttggcatagatgatatgcagaatccaagttagtagtcatcactttcgaataatcttcggccgtatactcgattgttggcttcctcacatttgt |
30719340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 30705395 - 30705439
Alignment:
| Q |
10 |
tgatcgcactgacattacagtaacagatatgtttttgattcatca |
54 |
Q |
| |
|
||||| || ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
30705395 |
tgatcacagtgacagtacagttacagatatgtttttgattcatca |
30705439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University