View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19700_high_6 (Length: 431)
Name: NF19700_high_6
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 23 - 420
Target Start/End: Complemental strand, 18938799 - 18938402
Alignment:
| Q |
23 |
catagcacctttgatccttgaaaattgagacgtctacattacatttaaccccaccaaaggctgattttcttcatcgaatggtgttgctgctgctatgtcg |
122 |
Q |
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| T |
18938799 |
catagcacctttgatccttgaaaattgagacgtataaattacatttaaccccaccaaaggctggttttcttcatcaaatggtgttgctgctgctatgccg |
18938700 |
T |
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| Q |
123 |
ttctattcatgtgccactgatcaaacttgattcattctccatttgtcgttgctttgcacgtacatgttgccattgatataaagattcacgcgccaaccca |
222 |
Q |
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| T |
18938699 |
ttctattcatgtgccactgatcaaacttgattcattctccatttgtcgttgctttgcgcgtacatgttgccattgatataaagattcacgcgccaaccca |
18938600 |
T |
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| Q |
223 |
attgatattgcaggtcgtgtttccgcatcatcccatagtctatcatttcttcgctttcaaatacaccacatggtcatagcaaacataggtaagctatcat |
322 |
Q |
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| T |
18938599 |
attgatattgcaggtcgtgtttccacatcatcccatagtctatcatttctacgctttcaaatacaccacatggtcatagcaaacatatgtaagctatcat |
18938500 |
T |
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| Q |
323 |
gagatagcaattcgagcagtaggaagaagagatcaataaaaccatcaactatttccaatttattcttaataaaattccacagccccgcttcgacctat |
420 |
Q |
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| T |
18938499 |
gagatagcaattcgagcagtaggaagaagagatcaacaaaaccatcaactatttccaatttatccttaataaaattccacagccccgcttcgacctat |
18938402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 413
Target Start/End: Original strand, 27914197 - 27914335
Alignment:
| Q |
275 |
gctttcaaatacaccacatggtcatagcaaacataggtaagctatcatgagatagcaattcgagcagtaggaagaagagatcaataaaaccatcaactat |
374 |
Q |
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|||| ||||| ||||| ||||||||| ||||||| ||| | ||||||| || | ||||| || || | |||| || ||||| ||||||||||||||| |
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| T |
27914197 |
gcttccaaatgcaccagatggtcataacaaacatgtgtaggttatcatgggacaacaatttgatcaattggaaaaaaagatcggcaaaaccatcaactat |
27914296 |
T |
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| Q |
375 |
ttccaatttattcttaataaaattccacagccccgcttc |
413 |
Q |
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| T |
27914297 |
ttccaatttatcatggataaaattccacagtctcgcttc |
27914335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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