View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19700_high_9 (Length: 418)
Name: NF19700_high_9
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 32898741 - 32898348
Alignment:
| Q |
17 |
agaatccaaggaaaaatttgaatatcaaagtcaacgttatatttttaccaaagccaaaaaacaagtcgaagaggaccctggaataaagtaaacaccattt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32898741 |
agaatccaaggaaaaatttgaatatcaaagtcaacgttatatttttaccaaagccaaaaaacaagttgaagaggaccctggaataaagtaaacaccattt |
32898642 |
T |
|
| Q |
117 |
ttgttataggacaacatgtattatataacttaatggcaaatgaaagcatgatttcatgtgacatatatacttacaatgagataaaccatataactaaaat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32898641 |
ttgttataggacaacatgtattatataacttaatggcaaatgaaagcatgacttcatgtgacatatatacttacaatgagataaaccatacaactaaaat |
32898542 |
T |
|
| Q |
217 |
aagttttctaccgtgcgttcagataccataccccaaaacatagccgaaatagtttt-ccctgacataaatgcagaacctacaacatttttgcagtcatgt |
315 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898541 |
aagttttctagcgtgtgttcagataccataccccaaaacatagccgaaatagttttcccctaacataaatgcagaacctacaacatttttgcagtcatgt |
32898442 |
T |
|
| Q |
316 |
gtgattagtataaatgaggtagaaaccatcaaaagatggaagtctgaaaagcaatcttactaccgttgtcaaaatatgtattaatgtcttcatc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32898441 |
gtgattagtataaatgaggtagaaaccatcaaaagatggaagtctgaaaagcaatcttactaccgtagtcaaaatatgtattaatgtcttcatc |
32898348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 39160679 - 39160623
Alignment:
| Q |
319 |
attagtataaatgaggtagaaaccatcaaaagatggaagtctgaaaagcaatcttac |
375 |
Q |
| |
|
|||||||||||||| |||||| ||||||| || ||||||||||||| |||||||| |
|
|
| T |
39160679 |
attagtataaatgaagtagaagacatcaaagaattgaagtctgaaaagaaatcttac |
39160623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University