View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19700_low_13 (Length: 349)

Name: NF19700_low_13
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19700_low_13
NF19700_low_13
[»] chr8 (1 HSPs)
chr8 (49-330)||(16399659-16399941)
[»] chr6 (3 HSPs)
chr6 (64-330)||(30886251-30886518)
chr6 (56-156)||(12524079-12524181)
chr6 (203-241)||(12523990-12524028)
[»] chr7 (1 HSPs)
chr7 (64-330)||(22848435-22848700)
[»] chr4 (2 HSPs)
chr4 (58-155)||(792413-792512)
chr4 (203-241)||(792326-792364)
[»] chr5 (2 HSPs)
chr5 (56-155)||(4053338-4053439)
chr5 (200-241)||(4053249-4053290)
[»] chr1 (2 HSPs)
chr1 (56-155)||(25070368-25070469)
chr1 (200-241)||(25070517-25070558)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 49 - 330
Target Start/End: Original strand, 16399659 - 16399941
Alignment:
Q  49 attatgatgagattttacaattagttatataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatcgaatgaaatct 148  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16399659 attatgatgagattttacaattagttatataacatcaaagacctaagtatattcatttattttattctggataaaaacatttgatgatcaaatgaaatct 16399758  T
Q  149 tatttttcnnnnnnnn-caattgactaaagcacaaaagtgattaccaaagattaaattattagtttcaatgagaatgaattattttcaaaagagtatgat 247  Q
    ||||||||         ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16399759 tatttttcaaaaaaaaacaattgactaaagcataaaagtgattaccaaagattaaattattagtttcaatgagaatgaattattttcaaaaaagtatgat 16399858  T
Q  248 cgcaagatgtaacaatctgactgcaattttttaagggaataaccaaattgtcatcaaattgagaaaagtgaggtgatggtttt 330  Q
    | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16399859 cacaagatgtaacaatttgactgcaattttttaagggaataaccaaattgtcatcaaattgagaaaagtgaggtgatggtttt 16399941  T

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Target: chr6 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 64 - 330
Target Start/End: Complemental strand, 30886518 - 30886251
Alignment:
Q  64 tacaattagttatataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatcgaatgaaatcttatttttcnnnnnnn 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||           
T  30886518 tacaattagttatataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgattgaatgaaatcttatttttcaaaaaaa 30886419  T
Q  164 ncaatt-gactaaagcacaaaagtgattaccaaagattaaattattagtttcaatgagaatgaattattttcaaaagagtatgatcgcaagatgtaacaa 262  Q
      |||| ||||||| || |||| ||||||||||||| ||  |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  30886418 aaaatttgactaaatcataaaaatgattaccaaagagtatgttattagttttaatgaaaattaattattttcaaaagagtatgatcgcaagatgtaacaa 30886319  T
Q  263 tctgactgcaattttttaagggaataaccaaattgtcatcaaattgagaaaagtgaggtgatggtttt 330  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  30886318 tctgactgcaaatttttaaggaaataaccaaattgtcatcaaattgagaaaagtgaggcgatggtttt 30886251  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 12524181 - 12524079
Alignment:
Q  56 tgagattttacaattagtta--tataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatcgaatgaaatcttattt 153  Q
    ||||||||||||||||||||  ||||||||||  |||||||||| ||||||| |||||||| ||||||||||||||||||||| |||||||||||| |||    
T  12524181 tgagattttacaattagttaattataacatcatagacctaagtacattcattcattttattttggataaaaacatttgatgattgaatgaaatctttttt 12524082  T
Q  154 ttc 156  Q
    |||    
T  12524081 ttc 12524079  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 12524028 - 12523990
Alignment:
Q  203 attattagtttcaatgagaatgaattattttcaaaagag 241  Q
    |||||||||||| || |||||||||||||||||||||||    
T  12524028 attattagtttctataagaatgaattattttcaaaagag 12523990  T

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Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 64 - 330
Target Start/End: Complemental strand, 22848700 - 22848435
Alignment:
Q  64 tacaattagttatataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatcgaatgaaatcttatttttcnnnnnnn 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  22848700 tacaattagttatataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatcgaatgaaatcttatttttcaaaaaaa 22848601  T
Q  164 ncaattgactaaagcacaaaagtgattaccaaagattaaattattagtttcaatgagaatgaattattttcaaaagagtatgatcgcaagatgtaacaat 263  Q
      ||||||||||| || |||| ||||||||||||| ||  |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22848600 a-aattgactaaatcataaaaatgattaccaaagagtatgttattagttttaatgagaattaattattttcaaaagagtatgatcgcaagatgtaacaat 22848502  T
Q  264 ctgactgcaattttttaagggaataaccaaattgtcatcaaattgagaaaagtgaggtgatggtttt 330  Q
    |||||| ||| |||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  22848501 ctgactacaaattttaaagggaataaccaaattgtcatcaaattgagaaaagttaggcgatgatttt 22848435  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 792512 - 792413
Alignment:
Q  58 agattttacaattagtta--tataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatcgaatgaaatcttattttt 155  Q
    ||||||||||||||||||  |||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  792512 agattttacaattagttaattataacatcatggacctaagtacattcattcattttattttggataaaaacatttgatgattgaatgaaatctttttttt 792413  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 792364 - 792326
Alignment:
Q  203 attattagtttcaatgagaatgaattattttcaaaagag 241  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  792364 attattagtttctatgagaatgaattattttcaaaagag 792326  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 4053439 - 4053338
Alignment:
Q  56 tgagattttacaattagtta--tataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatcgaatgaaatcttattt 153  Q
    ||||||||||||||||||||  ||||||||||  |||||||||| ||||||| |||||||| ||||||||||||||||||||| |||||||||||| |||    
T  4053439 tgagattttacaattagttaattataacatcatagacctaagtacattcattcattttattttggataaaaacatttgatgattgaatgaaatctttttt 4053340  T
Q  154 tt 155  Q
    ||    
T  4053339 tt 4053338  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 4053290 - 4053249
Alignment:
Q  200 taaattattagtttcaatgagaatgaattattttcaaaagag 241  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  4053290 taaattattagtttctatgagaatgaattattttcaaaagag 4053249  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 25070368 - 25070469
Alignment:
Q  56 tgagattttacaattagtta--tataacatcaaggacctaagtatattcatttattttattctggataaaaacatttgatgatcgaatgaaatcttattt 153  Q
    ||||||||||||||||||||  ||||||||||  |||||||||| ||||||| |||||||| ||||||||||||||||||||| |||||||||||| |||    
T  25070368 tgagattttacaattagttaattataacatcatagacctaagtacattcattcattttattttggataaaaacatttgatgattgaatgaaatctttttt 25070467  T
Q  154 tt 155  Q
    ||    
T  25070468 tt 25070469  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 25070517 - 25070558
Alignment:
Q  200 taaattattagtttcaatgagaatgaattattttcaaaagag 241  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  25070517 taaattattagtttctatgagaatgaattattttcaaaagag 25070558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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