View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19700_low_17 (Length: 307)
Name: NF19700_low_17
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 287
Target Start/End: Complemental strand, 1595855 - 1595571
Alignment:
| Q |
4 |
cgatgtgttccttaactagttcgatatagcgctaagaatggtatttttgggtttttagctaccaaactaagggatgcatgtaaaataaagataaagacat |
103 |
Q |
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| T |
1595855 |
cgatgtgttccttaactagttcgatatagcgctaagaatggtatttttgggtttttagctactgaactaagggatgcatgtaaaataaagataaagacat |
1595756 |
T |
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| Q |
104 |
atatgcnnnnnnnn-tgtgtaaattggttgagtttgattgattatgtatgtaatgcattgtacaagatgagtattaataggaaaaaattatccatattgg |
202 |
Q |
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| T |
1595755 |
atatgcaaaaaaaaatgtgtaaattggttgagtttgattgattatgtatgtaatgcattgtacaagatgagtattaatagaaaaaagttatccatattgg |
1595656 |
T |
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| Q |
203 |
cgaaacaacatggcctacaacgttcagtcttgcttgactatttatgcgggtagtgtgtgacgtctcatgttcatctaacagcttt |
287 |
Q |
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| T |
1595655 |
cgaaacaacatggcctacaacgttcagtcttgcttgactatttatgcgggtagtgtgtgacgtctcatgttcatctaacagcttt |
1595571 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 31952526 - 31952593
Alignment:
| Q |
121 |
gtaaattggttgagtttgattgattatgtatgtaatgcattgtacaagatgagtattaataggaaaaa |
188 |
Q |
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| T |
31952526 |
gtaaatagtttgagtttgattgactgtgtctgtaatgcattgtacaagatgagtatttacaggaaaaa |
31952593 |
T |
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