View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19700_low_18 (Length: 305)
Name: NF19700_low_18
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 37598228 - 37598521
Alignment:
| Q |
1 |
caactagttctctttgtaggagaaaaataaaacagcagaacttgaccgtcaatgtgaaaatacgccacgccgcttgtaagagcatctccaatgatacaat |
100 |
Q |
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| T |
37598228 |
caactagttctctttgtaggagaaaaataaaacagcaaaacttgaccgtcaatgtgaaaatacgccacgctgtttgtaagagtatctccaatgatacaat |
37598327 |
T |
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| Q |
101 |
ttattatgaatgacttaagtggactctatagtgccacatcactttgaagcaatctttcgtttatggcttcaataatgcaacctttaagaacttattatgg |
200 |
Q |
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| T |
37598328 |
ttattatgaatgacttaagtggactctatagtgccacatcattttgaagcaatctttcgtttatggcttcaatattgcaacctttaagaacttattatgg |
37598427 |
T |
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| Q |
201 |
gttcgacaattttcctaacaaattgataaggacgagttgctcggggtatatatgttagacatatctacaagaatgaattagaatcatatatatt |
294 |
Q |
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| T |
37598428 |
gttcgacaattttcctaacaaattgataaggacgagttgcttggggtatatatgttagacatatctacaagaatgaattagaatcatatatatt |
37598521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 37602764 - 37603041
Alignment:
| Q |
11 |
tctttgtaggagaaaaataaaacagcagaacttgaccgtcaatgtgaaaatacgccacgccgcttgtaagagcatctccaatgatacaatttattatgaa |
110 |
Q |
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|||||||||||||||||||||||| | || ||||| |||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37602764 |
tctttgtaggagaaaaataaaacatctgagcttgatcgtcaaggtgaaaatatgtcacgccgcttgcaagagcatctccaatgatacaatttattatgag |
37602863 |
T |
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| Q |
111 |
tgacttaagtggactctatagtgccacatcactttgaagcaatctttcgtttatggcttcaataatgcaacctttaagaacttattatgggttcgacaat |
210 |
Q |
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| T |
37602864 |
tgacttaagtggactctacaatgctacgtcactttgaagcaatctttcgtttttaacttcaatagtgcaacccttaagaacttattatgggttcgacaat |
37602963 |
T |
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| Q |
211 |
tttcctaacaaattgataaggacgagttgctcggggtatatatgttagacatatctacaagaatgaattagaatcata |
288 |
Q |
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| T |
37602964 |
ttgcctaacaaattgataaggacgagttgctcgatgtttatatgttagacacatctacaagaatgaattagaatcata |
37603041 |
T |
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