View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19700_low_19 (Length: 272)
Name: NF19700_low_19
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 32552803 - 32552561
Alignment:
| Q |
13 |
aatatcttcttgtaggtttgcatcccaaccgattttaaaagtcttcagtgtttgaagggtaaaagatccttctgcctcgatcatttgtttcacttcctct |
112 |
Q |
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| T |
32552803 |
aatatcttcttgtaggtttgcatcccaaccgattttaaatgtcttcagtgtttgaagggtaaaagatccttctgcctcgatcatttgtttcacttcctct |
32552704 |
T |
|
| Q |
113 |
atagtaggatgatacagaggcaaattaaacatgtccaattttgcttcttcaactaaaccctacaaggtaattttatagaaaaggcaaatcataagttaaa |
212 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32552703 |
atagtaggatgatatagaggcaaattaaacatgtccaattttgcttcttcaactaaaccctacaaggtaattttatagaaaaggcaaatcataagttaaa |
32552604 |
T |
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| Q |
213 |
acaaaacattatttttattccggtatctagatcatccaataat |
255 |
Q |
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| T |
32552603 |
acaaaacattatttttattccggtatctagatcatacaataat |
32552561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 32547103 - 32546942
Alignment:
| Q |
13 |
aatatcttcttgtaggtttgcatcccaaccgattttaaaagtcttcagtgtttgaagggtaaaagatccttctgcctcgatcatttgtttcacttcctct |
112 |
Q |
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|||||| ||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
32547103 |
aatatcatcttgtaggtttgcatcacaaccaattttaaaagtattcaatgtttgaagggtaaaagatgcttctgcctcgatcacttgtttcacttcctct |
32547004 |
T |
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| Q |
113 |
atagtaggatgatacagaggcaaattaaacatgtccaattttgcttcttcaactaaacccta |
174 |
Q |
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| T |
32547003 |
atggttggatgatatacaggcaaattaaacaagtccaattttgcttcttcaaccaaacccta |
32546942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 32549486 - 32549322
Alignment:
| Q |
13 |
aatatcttcttgtaggtttgcatcccaaccgattttaaaagtcttcagtgtttgaagggtaaaagatccttctgcctcgatcatttgtttcacttcctct |
112 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| | | |||||| | ||||||| |
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| T |
32549486 |
aatatcttcttgtaggtttgcatccaaaccgattttaaaagtcttcaatgtttgaagggtaaaagatccttctgtctcaacctcttgtttaatttcctct |
32549387 |
T |
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| Q |
113 |
atagtaggatgatacagaggcaaattaaacatgtccaattttgcttcttcaactaaaccctacaa |
177 |
Q |
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|||||||||||||| || ||||||||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
32549386 |
atagtaggatgatagaggggcaaattaaacaagtccactttttcttcttcaactaaaccctacaa |
32549322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 32648167 - 32648318
Alignment:
| Q |
26 |
aggtttgcatcccaaccgattttaaaagtcttcagtgtttgaagggtaaaagatccttctgcctcgatcatttgtttcacttcctctatagtaggatgat |
125 |
Q |
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||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| || | ||| | ||||||| || ||||||||| | |
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| T |
32648167 |
aggtttgcatcccaacccattttaaaagtcttaattgtttgaagggtaaaagatccttctgcctcaatgagttgacttacttcctttacagtaggatggt |
32648266 |
T |
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| Q |
126 |
acagaggcaaattaaacatgtccaattttgcttcttcaactaaaccctacaa |
177 |
Q |
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| ||| |||| ||| | ||||||||| | |||||||| ||||||||||| |
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| T |
32648267 |
atgcaggaaaatcaaataagtccaatttctcctcttcaaccaaaccctacaa |
32648318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 27879099 - 27878948
Alignment:
| Q |
26 |
aggtttgcatcccaaccgattttaaaagtcttcagtgtttgaagggtaaaagatccttctgcctcgatcatttgtttcacttcctctatagtaggatgat |
125 |
Q |
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||||||||||||||||| ||||||||||| |||| | |||||| |||||||||||||||||||| |||| |||| | |||||||||| ||||||||| | |
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| T |
27879099 |
aggtttgcatcccaacccattttaaaagttttcattacttgaagtgtaaaagatccttctgcctcaatcacttgtcttacttcctctacagtaggatggt |
27879000 |
T |
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| Q |
126 |
acagaggcaaattaaacatgtccaattttgcttcttcaactaaaccctacaa |
177 |
Q |
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| || |||||||||| ||| ||||| | |||||||||||||||||||| |
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| T |
27878999 |
atgttggaaaattaaacaagtctaatttctcctcttcaactaaaccctacaa |
27878948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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