View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19700_low_20 (Length: 266)

Name: NF19700_low_20
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19700_low_20
NF19700_low_20
[»] chr1 (4 HSPs)
chr1 (109-252)||(23223221-23223364)
chr1 (72-251)||(30675255-30675435)
chr1 (13-251)||(21451978-21452216)
chr1 (161-229)||(31313414-31313482)
[»] chr8 (7 HSPs)
chr8 (14-260)||(16052431-16052677)
chr8 (2-255)||(24119934-24120187)
chr8 (13-255)||(5570307-5570548)
chr8 (13-223)||(28901531-28901739)
chr8 (19-251)||(22894697-22894927)
chr8 (200-237)||(17970591-17970628)
chr8 (201-258)||(29765361-29765418)
[»] chr2 (5 HSPs)
chr2 (13-255)||(28278581-28278820)
chr2 (161-255)||(39730309-39730403)
chr2 (161-250)||(32276677-32276766)
chr2 (166-255)||(31449824-31449913)
chr2 (201-237)||(25886161-25886197)
[»] chr7 (11 HSPs)
chr7 (6-250)||(21471504-21471748)
chr7 (153-260)||(7494565-7494672)
chr7 (155-251)||(20470973-20471070)
chr7 (165-251)||(9761568-9761653)
chr7 (161-255)||(16536732-16536826)
chr7 (161-255)||(16628836-16628930)
chr7 (13-61)||(5722116-5722164)
chr7 (161-229)||(7956047-7956115)
chr7 (163-255)||(16577430-16577522)
chr7 (163-255)||(16588140-16588232)
chr7 (201-237)||(39270243-39270279)
[»] chr5 (8 HSPs)
chr5 (13-134)||(11274630-11274751)
chr5 (2-104)||(17027239-17027341)
chr5 (164-255)||(12029485-12029576)
chr5 (13-99)||(24841477-24841563)
chr5 (157-251)||(24841611-24841705)
chr5 (152-260)||(17027379-17027488)
chr5 (46-128)||(23125225-23125307)
chr5 (201-237)||(20548423-20548459)
[»] chr3 (4 HSPs)
chr3 (151-255)||(21017728-21017832)
chr3 (153-255)||(13911119-13911221)
chr3 (161-255)||(8402709-8402803)
chr3 (201-237)||(16223572-16223608)
[»] scaffold0282 (1 HSPs)
scaffold0282 (153-236)||(22723-22806)
[»] chr4 (3 HSPs)
chr4 (13-236)||(1696745-1696966)
chr4 (161-260)||(1676449-1676548)
chr4 (161-260)||(1682977-1683076)
[»] chr6 (5 HSPs)
chr6 (13-109)||(17860716-17860812)
chr6 (161-254)||(1755712-1755805)
chr6 (13-62)||(15574657-15574706)
chr6 (13-101)||(15576405-15576493)
chr6 (13-61)||(16527045-16527093)
[»] scaffold0072 (1 HSPs)
scaffold0072 (201-237)||(38382-38418)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 109 - 252
Target Start/End: Original strand, 23223221 - 23223364
Alignment:
Q  109 gaagaatgacaatataagcaacatcttcataaaggtatttccttattcttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaag 208  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||| |||||| ||||| ||||||||||    
T  23223221 gaagaatgactatataagcaacatcttcataaaggtattttcttattctttaaattcatgtaaattctaacttctttctattgtgttgcttaaggacaag 23223320  T
Q  209 aaacaatttaagtttggggttttgatgacggggcatcatatgat 252  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||    
T  23223321 aaacaatttaagtttggggttgtgatgacggagcatcatatgat 23223364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 251
Target Start/End: Original strand, 30675255 - 30675435
Alignment:
Q  72 tgcatggaagtagtaatctagttaagtctggtgatgggaagaatgacaatataagcaacatcttcataaaggtatttccttattctttt--aattcatgt 169  Q
    ||||| ||||| ||||  ||||||||| || || |||||||||||||||| | ||||| ||||||| | |||||| |||| ||||||||  |||||||||    
T  30675255 tgcatagaagtggtaagttagttaagtttgatggtgggaagaatgacaatctgagcaaaatcttcaaacaggtatgtcct-attcttttcaaattcatgt 30675353  T
Q  170 aaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatga 251  Q
    |||||||||||||||||||| |  |||| | |||||||| |||  |||||||| || ||| ||||||| | |||||||||||    
T  30675354 aaattttaacttcttgctatagttttgcttgaggacaagcaactgtttaagttcggtgttgtgatgacagagcatcatatga 30675435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 21452216 - 21451978
Alignment:
Q  13 tgtattttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctggtgatgggaag 112  Q
    ||||| || ||||| |||||||||||||||| ||||||| ||||||| || | || || |||||||| || |||| ||||| |||| || |  ||||| |    
T  21452216 tgtatctttgaattgtatgtggttgaaagtaagagtatcctctctaaatttgatctgcttgcatggaggtggtaacctagtcaagtttgatagtgggagg 21452117  T
Q  113 aatgacaatataagcaacatcttcataaaggtat-ttccttattcttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaa 211  Q
    ||||| ||| | ||||| | | ||  |||||||| ||   | ||  ||||||| |||| |||| |||||||||||||||| ||| | | |||||||| ||    
T  21452116 aatgaaaatctgagcaa-agcctccgaaaggtatgtttgatttttatttaatttatgtgaattctaacttcttgctattgtgtttcttgaggacaagtaa 21452018  T
Q  212 caatttaagtttggggttttgatgacggggcatcatatga 251  Q
     | ||||||||||||||| |||||||   |||||||||||    
T  21452017 tagtttaagtttggggttgtgatgacatagcatcatatga 21451978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 31313414 - 31313482
Alignment:
Q  161 aattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggtt 229  Q
    |||||||||||||| ||| |||||||||||  ||||| | |||||||| |||| |||||||||||||||    
T  31313414 aattcatgtaaattctaatttcttgctattttgttgcctgaggacaagcaacagtttaagtttggggtt 31313482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 16052677 - 16052431
Alignment:
Q  14 gtattttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctggtgatgggaaga 113  Q
    |||| |||||||| |||||||||||||||| || |||  ||| |||||  ||||||| ||||| ||||| |||| |||||||||| || |||||||||||    
T  16052677 gtatcttggaattgtatgtggttgaaagtaagaatatactctttaagtctgttcagcttgcatagaagtggtaagctagttaagtttgatgatgggaaga 16052578  T
Q  114 atgacaatataagcaacatcttcataaaggtatttccttattcttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaaca 213  Q
     || |||| | ||| | |||| |  ||| |||| | |||||||||| |||||||||||||| |||||||||||||||| | |||| ||||||||   | |    
T  16052577 gtggcaatctgagccaaatctccgaaaaagtatgttcttattctttaaattcatgtaaattctaacttcttgctattgtgctgcaaaaggacaaacgaga 16052478  T
Q  214 atttaagtttggggttttgatgacggggcatcatatgatattcttgg 260  Q
     ||||||||| ||||| ||||||||| ||||||||||||||| ||||    
T  16052477 gtttaagtttagggttgtgatgacggagcatcatatgatatttttgg 16052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 24119934 - 24120187
Alignment:
Q  2 aggtacatgcatgtattttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctg 101  Q
    |||||||| | ||||| |||||||||||||| ||| |||||| ||||||||||||| |||  |||| || ||||||||||| |||| ||||||||  |||    
T  24119934 aggtacatacgtgtatcttggaattatatgtcgtttaaagtaagagtatcttctcttagtctgttctgcttgcatggaagtggtaagctagttaaacctg 24120033  T
Q  102 gtgatgggaagaatgacaatataagcaacatcttcataaaggtatttccttattcttttaattcatgtaaattttaacttcttgctattgcgttgcataa 201  Q
     || ||| |||| ||||||| | ||| | |||| || ||| |||| |   |||||||| |||||||||||||  |||||| ||||||||| ||||  | |    
T  24120034 ttggtggaaagagtgacaatctgagccaaatctccaaaaatgtatgtttatattctttaaattcatgtaaatcctaacttattgctattgtgttgattga 24120133  T
Q  202 ggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgatatt 255  Q
    ||||||| |||| ||||  || |||||| ||||||||   ||||||||||||||    
T  24120134 ggacaagcaacattttattttgggggttgtgatgacgaatcatcatatgatatt 24120187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 5570548 - 5570307
Alignment:
Q  13 tgtattttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctggtgatgggaag 112  Q
    ||||| ||| |||| ||||||||||||||||  |||||||| | |||||  ||   || ||| ||| ||| |||| |||||||||   |||| ||||||     
T  5570548 tgtatcttgaaattgtatgtggttgaaagtaatagtatctttt-taagtctgtatcgcttgcgtggtagtggtaagctagttaagcacggtggtgggaaa 5570450  T
Q  113 aatgacaatataagcaacatcttcataaaggtatttccttattcttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaac 212  Q
    | ||||||| | ||||| |||||   |||||||| |   |||||||| |||||||||||| | |||||||||  ||||| ||||  | || ||||| |||    
T  5570449 agtgacaatctcagcaaaatctttggaaaggtatgtttctattctttaaattcatgtaaaatataacttcttattattgtgttgtttgagtacaagcaac 5570350  T
Q  213 aatttaagtttggggttttgatgacggggcatcatatgatatt 255  Q
    ||||||||||||||||| |||| |||| |||||||||||||||    
T  5570349 aatttaagtttggggttgtgataacggagcatcatatgatatt 5570307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 28901739 - 28901531
Alignment:
Q  13 tgtattttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctggtgatgggaag 112  Q
    ||||| |||||||| |||||||||||||||| |||||||||||||||| | ||||    |||||| | || |||| ||||| |||| || |  || || |    
T  28901739 tgtatcttggaattgtatgtggttgaaagtaagagtatcttctctaagcttgttctagttgcatgtatgtggtaagctagtcaagtatgatagtgagagg 28901640  T
Q  113 aatgacaatataagcaacatcttcataaaggtatttccttattcttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaac 212  Q
    ||||||||| | || || ||||  | |||| ||| |  | ||||||| |||||||||||||| ||||||||||||| || ||||| | || ||||| |||    
T  28901639 aatgacaatcttag-aaaatctctagaaagatatgt-ttcattctttaaattcatgtaaattctaacttcttgctactgtgttgcttgagaacaagcaac 28901542  T
Q  213 aatttaagttt 223  Q
     ||||||||||    
T  28901541 gatttaagttt 28901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 22894927 - 22894697
Alignment:
Q  19 ttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctggtgatgggaagaatgac 118  Q
    |||||||| |||||||||||||| |  ||||| |||||||||   |||| || || |||||||||| || ||||| |||| || || ||||| |||  ||    
T  22894927 ttggaattgtatgtggttgaaagaagaagtatattctctaagcatgttccgcttgtatggaagtagaaagctagtcaagtatgatgctgggaggaagtac 22894828  T
Q  119 aatataagcaacatcttcataaaggtatttccttattcttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaattta 218  Q
    | |   ||||| ||||||  |||||||| |  | ||| ||| |||||| ||||||| ||| |||||||||||| ||| | | ||||||||  ||| ||||    
T  22894827 agttcgagcaa-atcttcggaaaggtatgtt-tcattatttaaattcacgtaaattataatttcttgctattgtgtttcttgaggacaagggacagttta 22894730  T
Q  219 agtttggggttttgatgacggggcatcatatga 251  Q
    |||||| | || ||||||| | |||||||||||    
T  22894729 agtttgagattgtgatgacagagcatcatatga 22894697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 17970628 - 17970591
Alignment:
Q  200 aaggacaagaaacaatttaagtttggggttttgatgac 237  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  17970628 aaggacaagcaacaatttaagtttggggttgtgatgac 17970591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 29765361 - 29765418
Alignment:
Q  201 aggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgatattctt 258  Q
    |||||||| |||||||||||||||||||| ||||||| || |||| || | |||||||    
T  29765361 aggacaagcaacaatttaagtttggggttgtgatgacaggtcatcttacgttattctt 29765418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 28278820 - 28278581
Alignment:
Q  13 tgtattttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctggtgatgggaag 112  Q
    ||||| |||||||| ||||||||| |||||| ||||||||||||||| || |||  || ||||||||||| |||| ||||| || |||| |  ||||| |    
T  28278820 tgtatcttggaattctatgtggttaaaagtaagagtatcttctctaactttgtttcgcttgcatggaagtggtaaactagtcaaatctgatagtggga-g 28278722  T
Q  113 aatgacaatataagcaacatcttcataaaggtatttccttattcttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaac 212  Q
    ||||||||||| ||||| ||||  | ||||||||   || ||| ||| |||||||||||||| |||||||||||||||| ||||| | |||||||| |||    
T  28278721 aatgacaatatgagcaa-atctctagaaaggtatgctct-attatttaaattcatgtaaattctaacttcttgctattgtgttgcttgaggacaagcaac 28278624  T
Q  213 aatttaagtttggggttttgatgacggggcatcatatgatatt 255  Q
    | ||||||||| ||||| ||||||| | |||||||||||||||    
T  28278623 actttaagttttgggttgtgatgacagagcatcatatgatatt 28278581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 39730309 - 39730403
Alignment:
Q  161 aattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgatatt 255  Q
    ||||||| |||||| |||||||||||||||  ||||| | |||||||  |||| ||||||||||||||| ||||| ||| ||||||||| |||||    
T  39730309 aattcatataaattataacttcttgctattttgttgcttgaggacaaataacattttaagtttggggttgtgatggcggagcatcatataatatt 39730403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 32276766 - 32276677
Alignment:
Q  161 aattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatg 250  Q
    ||||||||||||   ||| |||||| ||||  ||||| ||||||||||||||  ||||||||||||||| |||||| ||  |||||||||    
T  32276766 aattcatgtaaaccctaagttcttgttattttgttgcgtaaggacaagaaaccgtttaagtttggggttgtgatgaaggaacatcatatg 32276677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 31449824 - 31449913
Alignment:
Q  166 atgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgatatt 255  Q
    ||||||||| | ||||||||||| |  ||| | | |||||||| |||| ||||||||||||||| |||||| || | ||| |||||||||    
T  31449824 atgtaaattctgacttcttgctaatttgttacttgaggacaagcaacagtttaagtttggggttgtgatgatggagtatcttatgatatt 31449913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 25886161 - 25886197
Alignment:
Q  201 aggacaagaaacaatttaagtttggggttttgatgac 237  Q
    |||||||| |||||||||||||||||||| |||||||    
T  25886161 aggacaagcaacaatttaagtttggggttgtgatgac 25886197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 21471504 - 21471748
Alignment:
Q  6 acatgcatgtattttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctggtga 105  Q
    |||| ||||||| |||||||| || ||||||||||||| ||||||| |||||||||| | ||  | |||||| | || |||| ||||| |||| || |      
T  21471504 acatacatgtatcttggaattgtacgtggttgaaagtaagagtatcctctctaagtttgatccacttgcatgaaggtggtaagctagtcaagtttgatag 21471603  T
Q  106 tgggaagaatgacaatataagcaacatcttcataaaggtatttccttattcttttaa-ttcatgtaaattttaacttcttgctattgcgttgcataagga 204  Q
    ||||| |||||||||| | |||||   ||||  |||||||| |  |||||||||||| ||||||| ||||||||||||| |||||||  |||| | ||||    
T  21471604 tgggaggaatgacaatctgagcaaagccttcggaaaggtatgtt-ttattcttttaaattcatgttaattttaacttctagctattgtattgcttgagga 21471702  T
Q  205 caagaaacaatttaagtttggggttttgatgacggggcatcatatg 250  Q
    |||  |||| ||||||||||||||| ||||||| | ||||||||||    
T  21471703 caatcaacagtttaagtttggggttgtgatgacagagcatcatatg 21471748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 260
Target Start/End: Original strand, 7494565 - 7494672
Alignment:
Q  153 attcttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgat 252  Q
    ||||||| |||||||||||||| | |||||||||||||| ||||| | |||||||| |||| |||||||||| |||| ||||||  | |||||| |||||    
T  7494565 attctttaaattcatgtaaattctgacttcttgctattgtgttgcttgaggacaagcaacagtttaagtttgtggttgtgatgaatgagcatcacatgat 7494664  T
Q  253 attcttgg 260  Q
    ||| ||||    
T  7494665 atttttgg 7494672  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 20471070 - 20470973
Alignment:
Q  155 tcttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaag-aaacaatttaagtttggggttttgatgacggggcatcatatga 251  Q
    ||||| |||| ||||||||| |||||||||||||| | ||||| | |||||||  ||||||||||||||||||||| ||||||||  |||||||||||    
T  20471070 tctttaaatttatgtaaattataacttcttgctatcgtgttgcttgaggacaaacaaacaatttaagtttggggttgtgatgacgaagcatcatatga 20470973  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 9761653 - 9761568
Alignment:
Q  165 catgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatga 251  Q
    ||||| |||| ||||||| ||||||||  | || | |||||||| |||||||||| ||||||||| ||||||| | |||||||||||    
T  9761653 catgtgaattctaacttcatgctattgtctagcttgaggacaagcaacaatttaa-tttggggttgtgatgacagagcatcatatga 9761568  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 255
Target Start/End: Complemental strand, 16536826 - 16536732
Alignment:
Q  161 aattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgatatt 255  Q
    |||||||||||||| |||||||||  ||||  ||||| | |||||||  ||||||||||||||  |||| |||||| ||  |||||| |||||||    
T  16536826 aattcatgtaaattataacttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatctgatatt 16536732  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 16628836 - 16628930
Alignment:
Q  161 aattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgatatt 255  Q
    |||||||||||||| |||||||||  ||||  ||||| | |||||||  ||||||||||||||  |||| |||||| ||  |||||| |||||||    
T  16628836 aattcatgtaaattataacttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatctgatatt 16628930  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 5722116 - 5722164
Alignment:
Q  13 tgtattttggaattatatgtggttgaaagtacgagtatcttctctaagt 61  Q
    ||||| |||||||| || ||||||||||| | |||||||||||||||||    
T  5722116 tgtatcttggaattgtaagtggttgaaagcaagagtatcttctctaagt 5722164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 7956047 - 7956115
Alignment:
Q  161 aattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggtt 229  Q
    |||| ||||||||| || | ||||| ||||  ||||| | |||||||||||| ||||||||||||||||    
T  7956047 aatttatgtaaattctaccgtcttgatattttgttgcttcaggacaagaaacgatttaagtttggggtt 7956115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 16577522 - 16577430
Alignment:
Q  163 ttcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgatatt 255  Q
    |||||||||||| |||||||||  ||||   |||| | |||||||  ||||||||||||||  |||| |||||| ||  ||||||||||||||    
T  16577522 ttcatgtaaattctaacttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatatgatatt 16577430  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 16588140 - 16588232
Alignment:
Q  163 ttcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgatatt 255  Q
    |||||||||||| |||||||||  ||||   |||| | |||||||  ||||||||||||||  |||| |||||| ||  ||||||||||||||    
T  16588140 ttcatgtaaattctaacttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatatgatatt 16588232  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 39270243 - 39270279
Alignment:
Q  201 aggacaagaaacaatttaagtttggggttttgatgac 237  Q
    |||||||| |||||||||||||||||||| |||||||    
T  39270243 aggacaagcaacaatttaagtttggggttgtgatgac 39270279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 11274751 - 11274630
Alignment:
Q  13 tgtattttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctggtgatgggaag 112  Q
    ||||| |||||||| ||||||||||||||||  ||||||||||| ||||  |||| || |||||| ||| ||||| ||||||||||||| || ||| |||    
T  11274751 tgtatcttggaattgtatgtggttgaaagtaaaagtatcttctcaaagtctgttctgcttgcatgaaagcagtaagctagttaagtctgatggtggaaag 11274652  T
Q  113 aatgacaatataagcaacatct 134  Q
    ||||||||||| ||||| ||||    
T  11274651 aatgacaatatgagcaaaatct 11274630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 17027239 - 17027341
Alignment:
Q  2 aggtacatgcatgtattttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctg 101  Q
    |||||||| ||||||| |||||||| || |||||||||| || ||||||||||||||| |  |||| || |||||||| ||  ||| |||||||||||||    
T  17027239 aggtacatacatgtatcttggaattgtacgtggttgaaaataagagtatcttctctaactgtgttccgcttgcatggatgttataagctagttaagtctg 17027338  T
Q  102 gtg 104  Q
    |||    
T  17027339 gtg 17027341  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 12029485 - 12029576
Alignment:
Q  164 tcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgatatt 255  Q
    ||||||||||| | ||||||| |||||  ||| | | ||||||| ||| | ||||||||||||||| ||||||| | |||||||||||||||    
T  12029485 tcatgtaaattcttacttctttctattttgttacttgaggacaaaaaatattttaagtttggggttgtgatgaccgagcatcatatgatatt 12029576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 24841477 - 24841563
Alignment:
Q  13 tgtattttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtc 99  Q
    ||||| |||||||| |||||||||||||||| |||||||||| ||||| |  |||  | ||||||||||| |||| ||||| |||||    
T  24841477 tgtatcttggaattgtatgtggttgaaagtaagagtatcttccctaagcttcttctacttgcatggaagtggtaagctagtcaagtc 24841563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 24841611 - 24841705
Alignment:
Q  157 ttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatga 251  Q
    |||||||| ||||||||| |||||||||| ||||| ||| | | |||||||| |||| | || || ||||||| ||||||| | |||||||||||    
T  24841611 ttttaattaatgtaaattctaacttcttgttattgtgtttcttgaggacaagcaacagtgtacgtatggggttgtgatgacagagcatcatatga 24841705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 17027379 - 17027488
Alignment:
Q  152 tattcttttaa-ttcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatg 250  Q
    ||||||||||| |||||||||||| |||||| |||||| || ||||| | |||| ||| ||  | |||||||||||||| ||| || || ||||||||||    
T  17027379 tattcttttaaattcatgtaaattctaactttttgctaatgtgttgcttgaggataagcaatgacttaagtttggggttgtgacgagggagcatcatatg 17027478  T
Q  251 atattcttgg 260  Q
    | ||| ||||    
T  17027479 acatttttgg 17027488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 23125307 - 23125225
Alignment:
Q  46 agtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctggtgatgggaagaatgacaatataagca 128  Q
    ||||||||||||||| | || | || ||||||||||| ||||  |||| ||||||||   |||||||||||||||||| ||||    
T  23125307 agtatcttctctaagcttgtcccgcttgcatggaagtggtaagttagtcaagtctggaagtgggaagaatgacaatatgagca 23125225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 20548423 - 20548459
Alignment:
Q  201 aggacaagaaacaatttaagtttggggttttgatgac 237  Q
    |||||||| |||||| |||||||||||||||||||||    
T  20548423 aggacaagcaacaatctaagtttggggttttgatgac 20548459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 21017728 - 21017832
Alignment:
Q  151 ttattcttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatg 250  Q
    ||||||||| ||||||||||| || |||||||||| ||||| ||||| |||||||||| ||| ||||||||||| |||| |||| || | ||||||||||    
T  21017728 ttattctttaaattcatgtaatttctaacttcttgttattgtgttgcttaaggacaagcaacgatttaagtttgaggttgtgataacagagcatcatatg 21017827  T
Q  251 atatt 255  Q
    |||||    
T  21017828 atatt 21017832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 13911119 - 13911221
Alignment:
Q  153 attcttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgat 252  Q
    ||||||| |||||||||||||| |||||| ||||||||| ||| | | |||||||| |||  ||||||||| ||||| ||||||||| | |||| |||||    
T  13911119 attctttaaattcatgtaaattctaacttattgctattgtgttactttaggacaagcaacggtttaagtttagggttgtgatgacggagaatcaaatgat 13911218  T
Q  253 att 255  Q
    |||    
T  13911219 att 13911221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 255
Target Start/End: Complemental strand, 8402803 - 8402709
Alignment:
Q  161 aattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgatatt 255  Q
    ||||| |||||||| || |||| ||| |||  ||||| | |||| ||| ||| |||||||||||||||| ||||||| | |||||||||||||||    
T  8402803 aattcctgtaaattctatcttcctgcaattttgttgcttgaggaaaagcaacgatttaagtttggggttgtgatgacagagcatcatatgatatt 8402709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 16223608 - 16223572
Alignment:
Q  201 aggacaagaaacaatttaagtttggggttttgatgac 237  Q
    |||||||| |||||||||||||||||||| |||||||    
T  16223608 aggacaagcaacaatttaagtttggggttgtgatgac 16223572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 22806 - 22723
Alignment:
Q  153 attcttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatga 236  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||| | ||| |||| |||| ||||||||||||||| ||||||    
T  22806 attctttaaattcatgtaaattataacttcttgctattgtgttgcttgagggcaagcaacactttaagtttggggttgtgatga 22723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 1696966 - 1696745
Alignment:
Q  13 tgtattttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctggtgatgggaag 112  Q
    ||||| |||||||| ||||||||||||||||  |||||| |||||||||| |||| || ||||||||||| |||  ||||| |||| ||    || || |    
T  1696966 tgtatcttggaattgtatgtggttgaaagtaaaagtatcctctctaagtttgttctgcttgcatggaagtggtatgctagtcaagtttgacagtgagagg 1696867  T
Q  113 aatgacaatataagcaacatcttcataaaggtatttccttattcttttaattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaac 212  Q
    ||||||||| | ||||| | || || |||||||| |  ||||| | | |||||||||||||| ||||||||||||| || ||||| | | || ||| |||    
T  1696866 aatgacaatctcagcaa-acctccagaaaggtatat-tttattttataaattcatgtaaattctaacttcttgctactgtgttgcttgaagataagcaac 1696769  T
Q  213 aatttaagtttggggttttgatga 236  Q
    | |||||||||| |||| ||||||    
T  1696768 agtttaagtttgaggttgtgatga 1696745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 1676548 - 1676449
Alignment:
Q  161 aattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgatattcttgg 260  Q
    |||||||||||||| ||||||||||||| || ||||| | | |||| | |||| ||||||||||||||| ||||||||  ||||||||||| ||| ||||    
T  1676548 aattcatgtaaattctaacttcttgctactgtgttgcttgaagacatgcaacagtttaagtttggggttgtgatgacgaagcatcatatgacatttttgg 1676449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 1683076 - 1682977
Alignment:
Q  161 aattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgatattcttgg 260  Q
    |||||||||||||| ||||||||||||| || ||||| | | |||| | |||| ||||||||||||||| ||||||||  ||||||||||| ||| ||||    
T  1683076 aattcatgtaaattctaacttcttgctactgtgttgcttgaagacatgcaacagtttaagtttggggttgtgatgacgaagcatcatatgacatttttgg 1682977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 17860812 - 17860716
Alignment:
Q  13 tgtattttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctggtgatggg 109  Q
    ||||| || ||||| |||||||||||||||| |||||| ||||||||    |||| || ||||||||||  |||| ||||||||||||| |||||||    
T  17860812 tgtatattagaattgtatgtggttgaaagtaagagtatgttctctaaaaatgttccgcttgcatggaagaggtaagctagttaagtctgatgatggg 17860716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 1755805 - 1755712
Alignment:
Q  161 aattcatgtaaattttaacttcttgctattgcgttgcataaggacaagaaacaatttaagtttggggttttgatgacggggcatcatatgatat 254  Q
    |||||||||| ||| |||||||| || |||  |||||   |||||| | || | ||||||||||||||| ||||||||| ||||||||||||||    
T  1755805 aattcatgtagattctaacttctcgcaattttgttgctagaggacaggtaatagtttaagtttggggttgtgatgacggagcatcatatgatat 1755712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 15574657 - 15574706
Alignment:
Q  13 tgtattttggaattatatgtggttgaaagtacgagtatcttctctaagtt 62  Q
    ||||| ||||||| ||||||||||||||||| ||||||| ||||||||||    
T  15574657 tgtatcttggaatcatatgtggttgaaagtaagagtatcctctctaagtt 15574706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 15576493 - 15576405
Alignment:
Q  13 tgtattttggaattatatgtggttgaaagtacgagtatcttctctaagttcgttcagcatgcatggaagtagtaatctagttaagtctg 101  Q
    ||||| |||||||| ||| ||||||||||||   |||||||||||||||| ||||  | ||||||||| | ||||| |||||| |||||    
T  15576493 tgtatcttggaattttatttggttgaaagtaattgtatcttctctaagtttgttcctcttgcatggaaatggtaatatagttacgtctg 15576405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 16527045 - 16527093
Alignment:
Q  13 tgtattttggaattatatgtggttgaaagtacgagtatcttctctaagt 61  Q
    ||||| ||| |||| ||||||||||||| || |||||||||||||||||    
T  16527045 tgtatcttgaaattgtatgtggttgaaattaagagtatcttctctaagt 16527093  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 38418 - 38382
Alignment:
Q  201 aggacaagaaacaatttaagtttggggttttgatgac 237  Q
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T  38418 aggacaagcaacaatttaagtttggggttgtgatgac 38382  T

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