View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19700_low_21 (Length: 264)
Name: NF19700_low_21
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_low_21 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 126 - 264
Target Start/End: Original strand, 16878236 - 16878374
Alignment:
| Q |
126 |
tgattgataattgatgtcgcaattttatatggttaattctattctaggtgtcaatcgttactattatttgtgttctaatgactcacttgcacttggtgga |
225 |
Q |
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| T |
16878236 |
tgattgataattgatgtcgcaattttatatggttaattctattctaggtgttaatcggtactattatttgtgttctaatgactcatttgcatttggtgga |
16878335 |
T |
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| Q |
226 |
ggtggtggttttgctttatacttagatggagatttgtaa |
264 |
Q |
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| T |
16878336 |
ggtggtggttttgctttatacttagatggagatttgtaa |
16878374 |
T |
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Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 16878003 - 16878132
Alignment:
| Q |
10 |
attatacttcataattcagattgtcgatttataatcaaaaggaagaaattaaacaagtgattggtaacttatgaag---------gttgttgttgttagt |
100 |
Q |
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| T |
16878003 |
attatacttcataattcagattgtcgatttataatcaaaaggaagaaattaaacaagtgattggtaacttatgaaggttgttgttgttgttgttgttagt |
16878102 |
T |
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| Q |
101 |
attattattattagacaaatgaaaatgatt |
130 |
Q |
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| T |
16878103 |
attattattcttagacaaatgaaaatgatt |
16878132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 32548222 - 32548284
Alignment:
| Q |
202 |
aatgactcacttgcacttggtggaggtggtggttttgctttatacttagatggagatttgtaa |
264 |
Q |
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| T |
32548222 |
aatgacttacttggacttggtggtggcggtaattttgctttatgcttagatggagatttgtaa |
32548284 |
T |
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