View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19700_low_22 (Length: 262)
Name: NF19700_low_22
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 32919112 - 32919348
Alignment:
| Q |
13 |
aatatatggggttagtataatgaataattcatatctttctaaaacagtgctaccaaatcataaagttctaacattatatatcaatcattatcaatgatag |
112 |
Q |
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| T |
32919112 |
aatatatggggttagtataatgaataattcatatctttctaaaacagtactaccaaatcataaagttctaacattatacatcaatcattatcaatgatag |
32919211 |
T |
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| Q |
113 |
ggaattgttgctggtggtttgttgatctacattcaactatggtgcactgagaaaaaaggaccagtttttgtcacaatgtttaaccctctttgtaccatat |
212 |
Q |
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| T |
32919212 |
ggaattgttgctggtggtttgttgatctacattcaactatggtgcactgagaaaaaaggaccagtttttgtcacaatgtttaaccctctttgtaccatat |
32919311 |
T |
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| Q |
213 |
ttgtgacaattctagcatacttcgtctttggtgaaaa |
249 |
Q |
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| T |
32919312 |
ttgtgacaattctagcatacttcgtctttggtgaaaa |
32919348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 66 - 249
Target Start/End: Original strand, 32952803 - 32952986
Alignment:
| Q |
66 |
caaatcataaagttctaacattatatatcaatcattatcaatgatagggaattgttgctggtggtttgttgatctacattcaactatggtgcactgagaa |
165 |
Q |
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| T |
32952803 |
caaatcttaaagttctaacattatgtatcaatcatcatcaatgacagggaattgttgttgctggatttttgacgtacattctactatggtgcactgagaa |
32952902 |
T |
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| Q |
166 |
aaaaggaccagtttttgtcacaatgtttaaccctctttgtaccatatttgtgacaattctagcatacttcgtctttggtgaaaa |
249 |
Q |
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| T |
32952903 |
aaaagggccagtttttgtcacagtgtttaaccctctttgtactatatttgtggcaattctagcatacttcgtctttggtgaaaa |
32952986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 76 - 250
Target Start/End: Original strand, 32935431 - 32935605
Alignment:
| Q |
76 |
agttctaacattatatatcaatcattatcaatgatagggaattgttgctggtggtttgttgatctacattcaactatggtgcactgagaaaaaaggacca |
175 |
Q |
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| T |
32935431 |
agttctaactttatatatcaatcattatcaatgataggggatttttgttgctggtttgttgacgtacattcaactgtggtgcactgagaaaaaaggacca |
32935530 |
T |
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| Q |
176 |
gtttttgtcacaatgtttaaccctctttgtaccatatttgtgacaattctagcatacttcgtctttggtgaaaat |
250 |
Q |
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| T |
32935531 |
gtttttgttacagtctttaaccctctttctaccatatttgtggcaattctagcatactttgtccttggtgaaaat |
32935605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 105 - 249
Target Start/End: Original strand, 32895804 - 32895948
Alignment:
| Q |
105 |
aatgatagggaattgttgctggtggtttgttgatctacattcaactatggtgcactgagaaaaaaggaccagtttttgtcacaatgtttaaccctctttg |
204 |
Q |
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| T |
32895804 |
aatgacagggaattgttgttggtggtttgttgatatacattctactatggagcactgagaaaaaagggccagtttttgtcacaatgtttaaccctcttag |
32895903 |
T |
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| Q |
205 |
taccatatttgtgacaattctagcatacttcgtctttggtgaaaa |
249 |
Q |
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| T |
32895904 |
taccatatttgtgacaattctagcttacttcgtccttggtgaaaa |
32895948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 62 - 249
Target Start/End: Original strand, 32885055 - 32885245
Alignment:
| Q |
62 |
ctaccaaatcataaagttctaacattatatatcaatcatt----atcaatgatagggaattgttgctggtggtttgttgatctacattcaactatggtgc |
157 |
Q |
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| T |
32885055 |
ctaccaaatc-taatgttctaacattatgcatcaatcattcaatattaattacagggaattgttggtggtggtttattgatctacattcaattatggtgc |
32885153 |
T |
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| Q |
158 |
actgagaaaaaaggaccagtttttgtcacaatgtttaaccctctttgtaccatatttgtgacaattctagcatacttcgtctttggtgaaaa |
249 |
Q |
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| T |
32885154 |
actgagaaaaaagggcctgtttttgtcactgtatttaaccctctttgtaccatatttgtggcaattctagcatacttcgtccttggtgaaaa |
32885245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 106 - 249
Target Start/End: Complemental strand, 19503916 - 19503773
Alignment:
| Q |
106 |
atgatagggaattgttgctggtggtttgttgatctacattcaactatggtgcactgagaaaaaaggaccagtttttgtcacaatgtttaaccctctttgt |
205 |
Q |
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|||| |||||||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19503916 |
atgacagggaattgttgtgagtggtttgttgacgtacactcaactatggtgcaccgagaaaaaaggaccagtttttgtcacaatgtttaaccctcttagt |
19503817 |
T |
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| Q |
206 |
accatatttgtgacaattctagcatacttcgtctttggtgaaaa |
249 |
Q |
| |
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|||||||||||| ||||||| ||||| | ||| |||||||||| |
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| T |
19503816 |
accatatttgtggcaattctggcatattctgtccttggtgaaaa |
19503773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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