View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19700_low_24 (Length: 251)
Name: NF19700_low_24
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 247
Target Start/End: Complemental strand, 1595567 - 1595322
Alignment:
| Q |
3 |
ctttgtggtgtgatctgatgacaaaattctaacaagtgaactagtgtaccgataagtagtaaaatttataaagtttgtctccgcgtgaatggtgaaattt |
102 |
Q |
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| T |
1595567 |
ctttgtggtgtgatctgatgacaaaattctaacaagtgaactagtgtgccgacaagtagtaaaatttataaattttgtctccacgtgaatggtgaaattt |
1595468 |
T |
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| Q |
103 |
ctactcaccaggatcgattttta--ataggatgtgtaaattgggaggaggggtgttgcactagatacatgttttgtttgtagaaaagaaataaaagaata |
200 |
Q |
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| T |
1595467 |
ctactcaccagtatcgattgttaatataggatgtgtaaattgggaggaggggtgttgcactagacacatg-tttgtttgtagaaaagaaataaaagaata |
1595369 |
T |
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| Q |
201 |
agattaaggtaagaagaatcattaggttgtttcgattcatctctctc |
247 |
Q |
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| T |
1595368 |
agattaaggtaagaagaatcattaggttgtttcgattcatttctctc |
1595322 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 20506845 - 20506919
Alignment:
| Q |
173 |
ttgtttgtagaaaagaaataaaaga-ataagattaaggtaagaagaatcattaggttgtttcgattcatctctct |
246 |
Q |
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| T |
20506845 |
ttgtttgtagaaaataaataaaagagataagatcaaggtaagtagaatgtttaggttgtttcgattcatttctct |
20506919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 26167427 - 26167358
Alignment:
| Q |
155 |
ttgcactagatacatgttttgtttgtagaaaagaaataaaagaataagattaaggtaagaagaatcatta |
224 |
Q |
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| T |
26167427 |
ttgcactagacacaaattttgtttatagaaaagaaataaacgaataagatcaaggtaaggagaatgatta |
26167358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 35947889 - 35947945
Alignment:
| Q |
18 |
tgatgacaaaattctaacaagtgaactagtgtaccgataagtagtaaaatttataaa |
74 |
Q |
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| T |
35947889 |
tgatgacaattttctaacaagtgtactagagtgtcgacaagtagtaaaatttataaa |
35947945 |
T |
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