View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19700_low_26 (Length: 223)
Name: NF19700_low_26
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 39 - 204
Target Start/End: Original strand, 16399776 - 16399941
Alignment:
| Q |
39 |
caattgactaaagcacaaaagtgattaccaaagattaaattattagtttcaatgagaatgaattattttcaaaagagtatgatcgcaagatgtaacaatc |
138 |
Q |
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| T |
16399776 |
caattgactaaagcataaaagtgattaccaaagattaaattattagtttcaatgagaatgaattattttcaaaaaagtatgatcacaagatgtaacaatt |
16399875 |
T |
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| Q |
139 |
tgactgcaattttttaagggaataaccaaattgtcatcaaattgagaaaagtgaggtgatggtttt |
204 |
Q |
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| T |
16399876 |
tgactgcaattttttaagggaataaccaaattgtcatcaaattgagaaaagtgaggtgatggtttt |
16399941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 30886413 - 30886251
Alignment:
| Q |
42 |
ttgactaaagcacaaaagtgattaccaaagattaaattattagtttcaatgagaatgaattattttcaaaagagtatgatcgcaagatgtaacaatctga |
141 |
Q |
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||||||||| || |||| ||||||||||||| || |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30886413 |
ttgactaaatcataaaaatgattaccaaagagtatgttattagttttaatgaaaattaattattttcaaaagagtatgatcgcaagatgtaacaatctga |
30886314 |
T |
|
| Q |
142 |
ctgcaattttttaagggaataaccaaattgtcatcaaattgagaaaagtgaggtgatggtttt |
204 |
Q |
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| T |
30886313 |
ctgcaaatttttaaggaaataaccaaattgtcatcaaattgagaaaagtgaggcgatggtttt |
30886251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 12524028 - 12523990
Alignment:
| Q |
77 |
attattagtttcaatgagaatgaattattttcaaaagag |
115 |
Q |
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| T |
12524028 |
attattagtttctataagaatgaattattttcaaaagag |
12523990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 22848599 - 22848435
Alignment:
| Q |
40 |
aattgactaaagcacaaaagtgattaccaaagattaaattattagtttcaatgagaatgaattattttcaaaagagtatgatcgcaagatgtaacaatct |
139 |
Q |
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||||||||||| || |||| ||||||||||||| || |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22848599 |
aattgactaaatcataaaaatgattaccaaagagtatgttattagttttaatgagaattaattattttcaaaagagtatgatcgcaagatgtaacaatct |
22848500 |
T |
|
| Q |
140 |
gactgcaattttttaagggaataaccaaattgtcatcaaattgagaaaagtgaggtgatggtttt |
204 |
Q |
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|||| ||| |||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||| |
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| T |
22848499 |
gactacaaattttaaagggaataaccaaattgtcatcaaattgagaaaagttaggcgatgatttt |
22848435 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 4053290 - 4053249
Alignment:
| Q |
74 |
taaattattagtttcaatgagaatgaattattttcaaaagag |
115 |
Q |
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| T |
4053290 |
taaattattagtttctatgagaatgaattattttcaaaagag |
4053249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 25070517 - 25070558
Alignment:
| Q |
74 |
taaattattagtttcaatgagaatgaattattttcaaaagag |
115 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25070517 |
taaattattagtttctatgagaatgaattattttcaaaagag |
25070558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 792364 - 792326
Alignment:
| Q |
77 |
attattagtttcaatgagaatgaattattttcaaaagag |
115 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
792364 |
attattagtttctatgagaatgaattattttcaaaagag |
792326 |
T |
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