View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19700_low_27 (Length: 220)

Name: NF19700_low_27
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19700_low_27
NF19700_low_27
[»] chr4 (1 HSPs)
chr4 (1-209)||(18926646-18926854)
[»] chr7 (13 HSPs)
chr7 (6-202)||(4671646-4671842)
chr7 (1-209)||(4665936-4666144)
chr7 (6-202)||(4642710-4642906)
chr7 (1-209)||(4629910-4630118)
chr7 (1-206)||(4660802-4661010)
chr7 (3-202)||(4652523-4652722)
chr7 (3-209)||(4635860-4636066)
chr7 (3-205)||(4846932-4847134)
chr7 (3-196)||(4698110-4698303)
chr7 (6-209)||(4784742-4784945)
chr7 (6-209)||(4817171-4817374)
chr7 (42-199)||(4862931-4863088)
chr7 (3-106)||(4713076-4713179)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 18926854 - 18926646
Alignment:
Q  1 tccccttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18926854 tccccttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccacccatttctcatccaa 18926755  T
Q  101 taatatgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18926754 taatatgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaagc 18926655  T
Q  201 ctttgcttc 209  Q
    |||||||||    
T  18926654 ctttgcttc 18926646  T

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Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 4671646 - 4671842
Alignment:
Q  6 ttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatccaataata 105  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  4671646 ttcaccattgtgctgacgtgggtagttgttatccccgtgggtcccaccttggataacccgaagtcggaaaccttagctatccatttctcatccaacaata 4671745  T
Q  106 tgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaagcct 202  Q
    |||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||| ||||||||||||    
T  4671746 tgttggtgctcttcacgtcacgatgtattattttgtgcttcacctcagcatgaagataatttagccctctcgcagcacccaatagaatctcaagcct 4671842  T

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Target: chr7; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 4665936 - 4666144
Alignment:
Q  1 tccccttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatccaa 100  Q
    ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  4665936 tccccttcaccatcgtgctgacatgggtagttgatatccctgtcggtcccaccttggataacccaaagtcggaaacctttgccatccatttttcatccaa 4666035  T
Q  101 taatatgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaagc 200  Q
     |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| || |||||||| | ||||||||||    
T  4666036 caatatgttggtgctcttcacgtcacggtgtattatcttctgtttcacctcagtatgaagataattcagccctctcgctgcacccaaaagaatctcaagc 4666135  T
Q  201 ctttgcttc 209  Q
    || ||||||    
T  4666136 ctctgcttc 4666144  T

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Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 4642710 - 4642906
Alignment:
Q  6 ttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatccaataata 105  Q
    ||||||||||||||||  |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  4642710 ttcaccattgtgctgatgtgggtagtcgatatccctgtaggtcccaccttggataacccgaagtcggaaaccttagctatccatttttcatccaacaata 4642809  T
Q  106 tgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaagcct 202  Q
    |||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||    
T  4642810 tgttggtgctcttcacgtcacgatgtattattttgtgcttcacctcagcatgaagataattcagccctcttgcggcacctaatagaatttcaagcct 4642906  T

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Target: chr7; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 4629910 - 4630118
Alignment:
Q  1 tccccttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatccaa 100  Q
    ||||||||||||| ||||||||||||||||| | ||| || || ||||||||||||||||||||||| || ||||||||||| | |||||||||||||||    
T  4629910 tccccttcaccatcgtgctgacatgggtagtcgttattcctgtaggtcccaccttggataacccgaaatcagaaaccttagctacccatttctcatccaa 4630009  T
Q  101 taatatgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaagc 200  Q
     | |||||||||||| || || |||||||||||||||||||| |||||||||| ||||||||||||||||||||| || ||||||||||  |||||||||    
T  4630010 cagtatgttggtgctctttacgtcacgatgtattatcttgtgcttcacctcagaatgaagataattcagccctctcgctgcacccaataggatctcaagc 4630109  T
Q  201 ctttgcttc 209  Q
    || ||||||    
T  4630110 ctctgcttc 4630118  T

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Target: chr7; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 4660802 - 4661010
Alignment:
Q  1 tccccttcaccattgtgctgac---atgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatc 97  Q
    ||||||||||||||||||||||   ||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||| | |||||| | |||    
T  4660802 tccccttcaccattgtgctgacgtgatgagtagtcgatatccctgtcggtcccaccttggataacccgaagtcggaaaccttagctacccatttgtgatc 4660901  T
Q  98 caataatatgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctca 197  Q
    ||| |||||||||||||| || || || || |||||||| |||||||||||||||||||||||||||| || ||||||||| | ||||||||  ||||||    
T  4660902 caacaatatgttggtgctctttacgtcgcggtgtattattttgtgtttcacctcagcatgaagataatgcaaccctcttgctgaacccaataggatctca 4661001  T
Q  198 agcctttgc 206  Q
    |||||||||    
T  4661002 agcctttgc 4661010  T

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Target: chr7; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 4652523 - 4652722
Alignment:
Q  3 cccttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatccaata 102  Q
    ||||||||||| ||||| |||||||| || || ||||  || |||||||| || ||||| || || || ||||||||||||| ||||||||||||||| |    
T  4652523 cccttcaccatcgtgctaacatgggttgtagacatccttgtcggtcccactttcgataatccaaaatcagaaaccttagccacccatttctcatccaaca 4652622  T
Q  103 atatgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaagcct 202  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  4652623 atatgttggtgctcttcacgtcacggtgtattatcttgtgtttcacctctgcatgaagataattcagccctctcgcggaacccaatagaatctcaagcct 4652722  T

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Target: chr7; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 4635860 - 4636066
Alignment:
Q  3 cccttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatccaata 102  Q
    ||||| || ||||||||||| |||||||| ||||| || || ||||||||||| |||||||| || || ||||||||||| ||||||||||||||||| |    
T  4635860 cccttaacaattgtgctgacgtgggtagtcgatatacctgtcggtcccacctttgataacccaaaatcagaaaccttagctatccatttctcatccaaca 4635959  T
Q  103 atatgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaagcct 202  Q
    ||||||||||||| || || ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| || |||||||| | ||| ||||||||    
T  4635960 atatgttggtgctctttacgtcacgatgtattatcttgtttttaacctcagtatgaagataattcagccctctagctgcacccaaaagaatttcaagcct 4636059  T
Q  203 ttgcttc 209  Q
     ||||||    
T  4636060 ctgcttc 4636066  T

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Target: chr7; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 205
Target Start/End: Complemental strand, 4847134 - 4846932
Alignment:
Q  3 cccttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatccaata 102  Q
    ||||||||||| ||||| ||||| ||  |||||||||| ||||||||||| || ||||||||||| || ||||||||||||| |||||| |||||||| |    
T  4847134 cccttcaccatagtgcttacatgagtcattgatatcccggttggtcccacttttgataacccgaaatcagaaaccttagccacccatttttcatccaaca 4847035  T
Q  103 atatgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaagcct 202  Q
    ||||||| || || || || ||||||||||| || ||||| ||| |  |  ||||||||||||||| ||| ||||| ||||| |||| |||||| || ||    
T  4847034 atatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatctcgagtct 4846935  T
Q  203 ttg 205  Q
    |||    
T  4846934 ttg 4846932  T

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Target: chr7; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 4698303 - 4698110
Alignment:
Q  3 cccttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatccaata 102  Q
    ||||||||| | |||||||| |||||  | || || || ||||||||||| || ||||||||||| || ||||||||||||| |||||| ||||| || |    
T  4698303 cccttcaccttagtgctgacgtgggtcatcgacattcctgttggtcccacttttgataacccgaaatcagaaaccttagccacccatttatcatctaaca 4698204  T
Q  103 atatgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctc 196  Q
    |||||||||| || ||||||||||| ||||| || ||||| ||| |  | |||||||||||||  || |||||||| || ||||||| ||||||    
T  4698203 atatgttggtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgaagataatgtaggcctcttgctgcccccaatagaatctc 4698110  T

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Target: chr7; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 4784945 - 4784742
Alignment:
Q  6 ttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatccaataata 105  Q
    |||||||| ||||||||||||||  | || ||||| || |||||||| || |||||||| || || ||||||||||||| |||||| |||||||| ||||    
T  4784945 ttcaccatagtgctgacatgggtcatcgacatccctgtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttttcatccaacaata 4784846  T
Q  106 tgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaagcctttg 205  Q
    |||| || || ||||| ||||| ||||| || ||||| ||| |  | ||||| ||||||| || ||| |  |||||||| |||| |||||||||||| ||    
T  4784845 tgtttgtactcttcacgtcacggtgtatgatattgtgcttcgcacctgcatgcagataatgcaacccccgcgcggcacctaatagaatctcaagcctctg 4784746  T
Q  206 cttc 209  Q
    ||||    
T  4784745 cttc 4784742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 4817374 - 4817171
Alignment:
Q  6 ttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatccaataata 105  Q
    |||||||| ||||||||||||||  | || ||||| || |||||||| || |||||||| || || ||||||||||||| |||||| |||||||| ||||    
T  4817374 ttcaccatagtgctgacatgggtcatcgacatccctgtaggtcccacttttgataacccaaaatcagaaaccttagccacccatttttcatccaacaata 4817275  T
Q  106 tgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaagcctttg 205  Q
    |||| || || ||||||||||| ||||| || ||||| ||| |  | ||||| | ||||| || ||| |  |||||||| |||| |||||||||||| ||    
T  4817274 tgtttgtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgcaaataatgcaacccccgcgcggcacctaatagaatctcaagcctctg 4817175  T
Q  206 cttc 209  Q
    ||||    
T  4817174 cttc 4817171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 199
Target Start/End: Original strand, 4862931 - 4863088
Alignment:
Q  42 gttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatccaataatatgttggtgcttttcacatcacgatgtattatcttgt 141  Q
    ||||||||||| || ||||||||||| || || |||||||||| |||||| |||||||| ||||||||||| || ||||| ||||| ||||| || ||||    
T  4862931 gttggtcccacttttgataacccgaaatcagacaccttagccacccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgt 4863030  T
Q  142 gtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatctcaag 199  Q
    | || ||  |||||||||||||||  | ||| ||||| || ||||| | |||||||||    
T  4863031 gctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaag 4863088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 4713179 - 4713076
Alignment:
Q  3 cccttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaaccttagccatccatttctcatccaata 102  Q
    ||||||||||| ||||||||||| ||  |||||||||| ||||||||||| || ||||| ||||| || ||||||||||||| |||||| |||||||| |    
T  4713179 cccttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaaccgaaatcagaaaccttagccacccatttttcatccaaca 4713080  T
Q  103 atat 106  Q
    ||||    
T  4713079 atat 4713076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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