View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19700_low_6 (Length: 433)

Name: NF19700_low_6
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19700_low_6
NF19700_low_6
[»] chr1 (23 HSPs)
chr1 (1-291)||(11028369-11028659)
chr1 (29-291)||(11033239-11033501)
chr1 (1-293)||(11004784-11005076)
chr1 (29-291)||(11010948-11011210)
chr1 (1-291)||(10974304-10974594)
chr1 (29-293)||(10914645-10914909)
chr1 (29-291)||(11007786-11008048)
chr1 (99-291)||(10979382-10979574)
chr1 (29-275)||(10903503-10903746)
chr1 (306-420)||(11030247-11030361)
chr1 (208-293)||(10901645-10901730)
chr1 (1-94)||(10983769-10983862)
chr1 (115-271)||(9319980-9320136)
chr1 (307-398)||(10977651-10977747)
chr1 (115-260)||(9350308-9350453)
chr1 (115-271)||(9318166-9318322)
chr1 (115-254)||(8873944-8874083)
chr1 (115-254)||(8964607-8964746)
chr1 (100-254)||(8999758-8999912)
chr1 (98-271)||(9384303-9384476)
chr1 (98-270)||(9453683-9453855)
chr1 (98-268)||(9399713-9399883)
chr1 (98-270)||(9432696-9432868)
[»] chr6 (1 HSPs)
chr6 (52-271)||(15927009-15927228)
[»] chr4 (1 HSPs)
chr4 (110-156)||(27692613-27692659)
[»] chr8 (1 HSPs)
chr8 (145-189)||(1901520-1901564)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 11028369 - 11028659
Alignment:
Q  1 tctcatattgaagagagtaattatttgggttgcgaaaaattgcatgctatttctcttggagttgcttgaggcattgagtacttgcataatggatataata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11028369 tctcatattgaagagagtaattatttgggttgcgaaaaattgcatgctatttctcttggagttgcttgaggcattgagtacttgcataatggatgtaata 11028468  T
Q  101 tgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcctac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11028469 tgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctagactttgtcctac 11028568  T
Q  201 agataaaagcattgttacattaactgcggcaagaggaaccattggatacatggcccctgaactattctacagaaacgtcggcacaatatct 291  Q
    || ||| ||||||||  |||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||    
T  11028569 aggtaatagcattgtgtcattaactgcagcaagaagaaccattggatacatggcccctgaactattctatagaaatgttggcacaatatct 11028659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 29 - 291
Target Start/End: Complemental strand, 11033501 - 11033239
Alignment:
Q  29 gttgcgaaaaattgcatgctatttctcttggagttgcttgaggcattgagtacttgcataatggatataatatgaaaattctacactttgatataaagcc 128  Q
    |||||||| ||||| || | |||||||||||||| ||| |||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||    
T  11033501 gttgcgaacaattgtattcaatttctcttggagtggctcgaggcattgagtacttgcataatggatgcgatatgaaaattctacactttgacataaagcc 11033402  T
Q  129 tcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcctacagataaaagcattgttacattaactgcg 228  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||     
T  11033401 tcataacatccttcttgatgagaatttcaacccaaaagtttctgattttggactagctagactttgtcctacagataaaagcattgtcacattaactgca 11033302  T
Q  229 gcaagaggaaccattggatacatggcccctgaactattctacagaaacgtcggcacaatatct 291  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||    
T  11033301 gcaagaggaaccattggatatatggcccctgaactattctaccgaaatgtcggcacaatatct 11033239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 11004784 - 11005076
Alignment:
Q  1 tctcatattgaagagagtaattatttgggttgcgaaaaattgcatgctatttctcttggagttgcttgaggcattgagtacttgcataatggatataata 100  Q
    |||| ||||||||||||||| | |||| ||||  |||||||| |||| ||||||||||| || ||| |||| ||||  ||||||||||||||||  ||||    
T  11004784 tctcttattgaagagagtaactctttgagttgtaaaaaattgtatgccatttctcttggtgtagctcgaggtattgcatacttgcataatggatgcaata 11004883  T
Q  101 tgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcctac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||| ||| ||||||    
T  11004884 tgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggattagctagggtttctcctac 11004983  T
Q  201 agataaaagcattgttacattaactgcggcaagaggaaccattggatacatggcccctgaactattctacagaaacgtcggcacaatatctca 293  Q
    ||| |||||||||||  | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11004984 agacaaaagcattgtgtccttaactgcagcaagaggaaccattggatacatggcccctgaactattctacagaaatgtcggcacaatatctca 11005076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 29 - 291
Target Start/End: Complemental strand, 11011210 - 11010948
Alignment:
Q  29 gttgcgaaaaattgcatgctatttctcttggagttgcttgaggcattgagtacttgcataatggatataatatgaaaattctacactttgatataaagcc 128  Q
    |||||||| ||||| || | |||||||||||||| ||| | |||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  11011210 gttgcgaacaattgtattcaatttctcttggagtggctcgtggcattgagtacttgcatcatggatgcaatatgaaaattctacactttgatataaagcc 11011111  T
Q  129 tcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcctacagataaaagcattgttacattaactgcg 228  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||     
T  11011110 tcataacattcttcttgatgaaaatttcaatccaaaagtttctgattttggactagctagactttgtcctacagataaaagcattgtgtcattaactgca 11011011  T
Q  229 gcaagaggaaccattggatacatggcccctgaactattctacagaaacgtcggcacaatatct 291  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||    
T  11011010 gcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggcacaatatct 11010948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 10974594 - 10974304
Alignment:
Q  1 tctcatattgaagagagtaattatttgggttgcgaaaaattgcatgctatttctcttggagttgcttgaggcattgagtacttgcataatggatataata 100  Q
    ||||| ||||||||||||||||  ||| |||| |||||||||||||| ||||||||||| || ||| | || ||||||||||| |||||||||| | |||    
T  10974594 tctcacattgaagagagtaattccttgagttgtgaaaaattgcatgccatttctcttggggtggctcgtggaattgagtactttcataatggatgtgata 10974495  T
Q  101 tgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcctac 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||||||||||||||| ||||| ||||| |||||||||||    
T  10974494 tgaaaattctacactttgatataaagcctcataccatccttcttgatgaatatttcaatccaaaagtttctgattttggacttgctagactttgtcctac 10974395  T
Q  201 agataaaagcattgttacattaactgcggcaagaggaaccattggatacatggcccctgaactattctacagaaacgtcggcacaatatct 291  Q
    |||||||||||||||  |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||  | ||||||||||||    
T  10974394 agataaaagcattgtgccattaactgctgcaagaggaacgattggatacatggcccctgaactgttctacagaaatattggcacaatatct 10974304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 29 - 293
Target Start/End: Complemental strand, 10914909 - 10914645
Alignment:
Q  29 gttgcgaaaaattgcatgctatttctcttggagttgcttgaggcattgagtacttgcataatggatataatatgaaaattctacactttgatataaagcc 128  Q
    |||||||| ||||| || | |||||||||||||| ||| | ||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||    
T  10914909 gttgcgaacaattgtattcaatttctcttggagtggctcgtggcattgagtacttgcacaatggatgcaatatgaaaattctacactttgatataaagcc 10914810  T
Q  129 tcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcctacagataaaagcattgttacattaactgcg 228  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||  ||||||||||     
T  10914809 tcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagccaggctttctcctacagataaaagcattgtgtcattaactgca 10914710  T
Q  229 gcaagaggaaccattggatacatggcccctgaactattctacagaaacgtcggcacaatatctca 293  Q
    |||||||||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||||||||    
T  10914709 gcaagaggaaccatcggatatatggcccctgaattattctatagaaatgtcggcacaatatctca 10914645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 29 - 291
Target Start/End: Complemental strand, 11008048 - 11007786
Alignment:
Q  29 gttgcgaaaaattgcatgctatttctcttggagttgcttgaggcattgagtacttgcataatggatataatatgaaaattctacactttgatataaagcc 128  Q
    |||||||| ||||| || | ||||| |||||||| ||| | ||||||||||||||||| |||||||  ||||||||||||||||||||||| ||||||||    
T  11008048 gttgcgaacaattgtattcaatttcacttggagtggctcgtggcattgagtacttgcacaatggatgcaatatgaaaattctacactttgacataaagcc 11007949  T
Q  129 tcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcctacagataaaagcattgttacattaactgcg 228  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||  ||||||||||     
T  11007948 tcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtcctacagataaaagcattgtgtcattaactgca 11007849  T
Q  229 gcaagaggaaccattggatacatggcccctgaactattctacagaaacgtcggcacaatatct 291  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||    
T  11007848 gcaagaggaaccattggatacatggcccctgaactattctaccgaaatgtcggcacgatatct 11007786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 99 - 291
Target Start/End: Complemental strand, 10979574 - 10979382
Alignment:
Q  99 tatgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcct 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| |||||||||    
T  10979574 tatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtcct 10979475  T
Q  199 acagataaaagcattgttacattaactgcggcaagaggaaccattggatacatggcccctgaactattctacagaaacgtcggcacaatatct 291  Q
    |||||||||||| ||||  |||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||    
T  10979474 acagataaaagctttgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatct 10979382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 29 - 275
Target Start/End: Complemental strand, 10903746 - 10903503
Alignment:
Q  29 gttgcgaaaaattgcatgctatttctcttggagttgcttgaggcattgagtacttgcataatggatataatatgaaaattctacactttgatataaagcc 128  Q
    |||| ||||| ||| |||| |||||| ||| ||| ||| ||||||||| |||||||||||| ||||  ||| ||||||||||||||||||||||||||||    
T  10903746 gttgtgaaaagttgtatgccatttctgttgaagtggctcgaggcattgcgtacttgcataacggatgcaatgtgaaaattctacactttgatataaagcc 10903647  T
Q  129 tcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcctacagataaaagcattgttacattaactgcg 228  Q
    ||||||||| ||||||||||| | ||| |||||||||||||||||||| ||||| || || |||| |||||||||||||||||||||  ||||||||||     
T  10903646 tcataacattcttcttgatgaaagtttcaatccaaaagtttctgattttggacttgccagactttctcctacagataaaagcattgtgtcattaactgca 10903547  T
Q  229 gcaagaggaaccattggatacatggcccctgaactattctacagaaa 275  Q
    ||||||||||||||||||||    ||||||||||| |||||||||||    
T  10903546 gcaagaggaaccattggata---tgcccctgaacttttctacagaaa 10903503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 306 - 420
Target Start/End: Original strand, 11030247 - 11030361
Alignment:
Q  306 cccatacaaaattaattaaacttcttatacatttgaaatgtatcgtcttatgagtttgctttaaatataagaagtgtttctcactcaattagtagaactc 405  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11030247 cccatacataattaattaaacttcttatacatttgaaatgtaacgtcttatgagtttgctttaaatataagaagtgttcctcactcaattagtagaactc 11030346  T
Q  406 taaatataagaagtg 420  Q
    |||||||||||||||    
T  11030347 taaatataagaagtg 11030361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 208 - 293
Target Start/End: Complemental strand, 10901730 - 10901645
Alignment:
Q  208 agcattgttacattaactgcggcaagaggaaccattggatacatggcccctgaactattctacagaaacgtcggcacaatatctca 293  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  10901730 agcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctca 10901645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 10983862 - 10983769
Alignment:
Q  1 tctcatattgaagagagtaattatttgggttgcgaaaaattgcatgctatttctcttggagttgcttgaggcattgagtacttgcataatggat 94  Q
    ||||||| ||||||||||||||  ||| |||| |||||||||||||| ||||||||||| || ||| | |||||||||||||||||||||||||    
T  10983862 tctcataatgaagagagtaattccttgagttgtgaaaaattgcatgccatttctcttggggtggctcgtggcattgagtacttgcataatggat 10983769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 271
Target Start/End: Complemental strand, 9320136 - 9319980
Alignment:
Q  115 tttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcctacagataaaagcattg 214  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||  || |||||||| || || || || |||| ||||| |||||  || |  |||||||    
T  9320136 tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgctaagctttatcctaatgagattagcattg 9320037  T
Q  215 ttacattaactgcggcaagaggaaccattggatacatggcccctgaactattctaca 271  Q
    | || |||||||| ||||||||||| |||||||| ||||| |||||| | |||||||    
T  9320036 tcactttaactgcagcaagaggaacaattggatatatggctcctgaattgttctaca 9319980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 398
Target Start/End: Complemental strand, 10977747 - 10977651
Alignment:
Q  307 ccatacaaaattaattaaacttctta-tacatttgaaatgt----atcgtcttatgagtttgctttaaatataagaagtgtttctcactcaattagt 398  Q
    ||||||||| ||||||||| |||||| | ||||||||||||    | ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10977747 ccatacaaatttaattaaatttcttaatgcatttgaaatgtcgaaaacgtcttatgagtttgctttaaatataagaagtgttcctcactcaattagt 10977651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 260
Target Start/End: Complemental strand, 9350453 - 9350308
Alignment:
Q  115 tttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcctacagataaaagcattg 214  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||  || |||||||| || || || || |||| ||||| |||||  || |  |||||||    
T  9350453 tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgctaagctttatcctaatgagattagcattg 9350354  T
Q  215 ttacattaactgcggcaagaggaaccattggatacatggcccctga 260  Q
    | || |||||||| ||||||||||| |||||||| ||||| |||||    
T  9350353 tcactttaactgcagcaagaggaacaattggatatatggctcctga 9350308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 115 - 271
Target Start/End: Original strand, 9318166 - 9318322
Alignment:
Q  115 tttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcctacagataaaagcattg 214  Q
    |||||||| ||||| ||||||||||||||||||||||| |||| ||| |||||||| || || || || || | ||||| ||| |  || |  |||||||    
T  9318166 tttgatatcaagccccataacatccttcttgatgagaactttattcccaaagtttcagactttggtctggcaaagctttatccaaatgacattagcattg 9318265  T
Q  215 ttacattaactgcggcaagaggaaccattggatacatggcccctgaactattctaca 271  Q
    | || |||||||| || |||||||| |||||||||||||| |||||| | |||||||    
T  9318266 tcactttaactgcagctagaggaacaattggatacatggctcctgaattgttctaca 9318322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 254
Target Start/End: Original strand, 8873944 - 8874083
Alignment:
Q  115 tttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcctacagataaaagcattg 214  Q
    |||||||| |||||||| |||||||||||||||||||| |||| ||| ||||| ||||| || ||| | |||| ||| | ||||   || || |||||||    
T  8873944 tttgatattaagcctcacaacatccttcttgatgagaactttactccgaaagtctctgactttggattggctaagctatatcctgtggagaatagcattg 8874043  T
Q  215 ttacattaactgcggcaagaggaaccattggatacatggc 254  Q
    | ||| | |||||||||||||| ||||||||||| |||||    
T  8874044 tcacaatgactgcggcaagaggtaccattggatatatggc 8874083  T

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Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 8964746 - 8964607
Alignment:
Q  115 tttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcctacagataaaagcattg 214  Q
    |||||||| |||||||| ||||||||||||||||||||||| |  |||||||| ||||| || ||| | |||| ||| | ||||  ||| || |||||||    
T  8964746 tttgatattaagcctcacaacatccttcttgatgagaatttcaccccaaaagtctctgactttggattggctaagctatatcctgtagagaatagcattg 8964647  T
Q  215 ttacattaactgcggcaagaggaaccattggatacatggc 254  Q
    | ||| | || ||||||||||| ||||||||||| |||||    
T  8964646 tcacaatgacagcggcaagaggtaccattggatatatggc 8964607  T

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Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 8999912 - 8999758
Alignment:
Q  100 atgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtccta 199  Q
    ||||| ||| |||| |||||||| |||||||| ||||||||||||||||| || || |  |||||||| ||||| |||||| | |||| ||| | |||      
T  8999912 atgaagattttacattttgatatcaagcctcacaacatccttcttgatgaaaacttcacaccaaaagtctctgacttcggattggctaagctatatcccg 8999813  T
Q  200 cagataaaagcattgttacattaactgcggcaagaggaaccattggatacatggc 254  Q
      || || |||||||| ||| | |||||||||||||| ||||||||||| |||||    
T  8999812 tggagaatagcattgtcacaatgactgcggcaagaggtaccattggatatatggc 8999758  T

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Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 9384476 - 9384303
Alignment:
Q  98 atatgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcc 197  Q
    ||||| |||||||||| |||||||| ||||||||||| || ||||| || ||  | |||  |||||| ||||| ||||| ||||| || | ||| | |||    
T  9384476 atatgcaaattctacattttgatatcaagcctcataatattcttctagacgaagagtttgttccaaaggtttcggattttggacttgcaaagctatatcc 9384377  T
Q  198 tacagataaaagcattgttacattaactgcggcaagaggaaccattggatacatggcccctgaactattctaca 271  Q
    |    |  | ||||||||||| ||||||||||||||||||||  | || |||||||| |||||||| |||||||    
T  9384376 tgtgaacgatagcattgttaccttaactgcggcaagaggaactttgggttacatggctcctgaactgttctaca 9384303  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 270
Target Start/End: Original strand, 9453683 - 9453855
Alignment:
Q  98 atatgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcc 197  Q
    ||||| ||||| | || |||||||| |||||||| |||||||||||||| || ||||| |  || |||||||| ||||| || || || | ||||| |||    
T  9453683 atatgcaaattttgcattttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcagattttggtcttgcaaagctttatcc 9453782  T
Q  198 tacagataaaagcattgttacattaactgcggcaagaggaaccattggatacatggcccctgaactattctac 270  Q
    ||  || || ||||||||  | || || || ||||||||||| ||||| |||||||| |||||| | ||||||    
T  9453783 tattgacaatagcattgtcgctttgacagcagcaagaggaacaattggttacatggctcctgaattgttctac 9453855  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 9399883 - 9399713
Alignment:
Q  98 atatgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcc 197  Q
    ||||| ||||| | || |||||||| |||||||| |||||||||||||| || ||||| |  || |||||||| || || || || || | ||||| |||    
T  9399883 atatgcaaattttgcattttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcggactttggtcttgcaaagctttatcc 9399784  T
Q  198 tacagataaaagcattgttacattaactgcggcaagaggaaccattggatacatggcccctgaactattct 268  Q
    ||  || ||||||||||  || || |  || ||||||||||| ||||| |||||||| |||||||| ||||    
T  9399783 tattgacaaaagcattgccactttgatggcagcaagaggaacaattggttacatggctcctgaactgttct 9399713  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 270
Target Start/End: Original strand, 9432696 - 9432868
Alignment:
Q  98 atatgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctaggctttgtcc 197  Q
    ||||| ||||| | || |||||||| |||||||| ||||||||||| || || ||||| |  || |||||||| || || || || || | ||||| |||    
T  9432696 atatgcaaattttgcattttgatattaagcctcacaacatccttctggacgaaaatttcatccctaaagtttcggactttggtcttgcaaagctttatcc 9432795  T
Q  198 tacagataaaagcattgttacattaactgcggcaagaggaaccattggatacatggcccctgaactattctac 270  Q
    ||  || ||||||||||  || || || || ||||||||||| ||||| |||||||| |||||| | ||||||    
T  9432796 tattgacaaaagcattgccactttgacggcagcaagaggaacaattggttacatggctcctgaattgttctac 9432868  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 271
Target Start/End: Original strand, 15927009 - 15927228
Alignment:
Q  52 tctcttggagttgcttgaggcattgagtacttgcataatggatataatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaga 151  Q
    ||||||||||||||| | || || |  ||||| ||| | |||| ||| ||| ||||| | || ||||| || ||||| ||||||||||||||||||||||    
T  15927009 tctcttggagttgctcgtggtatggcttacttacatcaaggatgtaacatgcaaattttgcattttgacatcaagccccataacatccttcttgatgaga 15927108  T
Q  152 attttaatccaaaagtttctgatttcggactagctaggctttgtcctacagataaaagcattgttacattaactgcggcaagaggaaccattggatacat 251  Q
    | ||||  || |||||||| || || || || || | ||||| |||||  || |  || ||||| || |||||||| ||||||||||| |||||||||||    
T  15927109 actttatccccaaagtttccgactttggtcttgcaaagctttatcctaatgagattagtattgtcactttaactgcagcaagaggaacgattggatacat 15927208  T
Q  252 ggcccctgaactattctaca 271  Q
    ||| |||||| |||||||||    
T  15927209 ggctcctgaattattctaca 15927228  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 27692659 - 27692613
Alignment:
Q  110 tacactttgatataaagcctcataacatccttcttgatgagaatttt 156  Q
    |||||||||||||||| ||||||||||| |||||||| |||||||||    
T  27692659 tacactttgatataaaacctcataacattcttcttgacgagaatttt 27692613  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 1901520 - 1901564
Alignment:
Q  145 gatgagaattttaatccaaaagtttctgatttcggactagctagg 189  Q
    ||||| |||||||| |||||| |||||||||||||||| ||||||    
T  1901520 gatgaaaattttaagccaaaactttctgatttcggactcgctagg 1901564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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