View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19700_low_8 (Length: 429)
Name: NF19700_low_8
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 9441052 - 9440640
Alignment:
| Q |
1 |
ccgaggcatgtgtcgtgcacaaaatcgcgtatggttttctcaaggttgtccaagcagaattggaatccttgcagttgtaatccttggactatacataata |
100 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9441052 |
ccgaggcatgtgttgtgcacaaaattgcgtatggttttctcaaggttgtccaagcagaattggaatccttgcagttgtaatccttggactatacataata |
9440953 |
T |
|
| Q |
101 |
tcatatgctcctggaatcggaacagtgccgtgggttctaaactcggagatttatcctttaaggttcagaggaataggtggaggtatagcagcagtttgca |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9440952 |
tcatatgctcctggaatcggaacagtgccttgggttctaaactcggagatttatcctttaaggttcagaggaataggtggaggtatagcagcagttttca |
9440853 |
T |
|
| Q |
201 |
actggtgtgctaatttaattatgagtgagtcattcttaagcatgataaagactctaggaactactggaacattcctcacctttgcagggttctctttgat |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9440852 |
actggtgtgctaatgtaattatgagtgagtcattcttaagcatgataaagactctaggaactactggaacattcctcacctttgcagggttctctttgat |
9440753 |
T |
|
| Q |
301 |
tggatttgtagccatttatttgttggtgcctgaaaccaaaggtcttcagtttgaagaggttgagaaattgcttcagaaagggtttagacctttcccattt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9440752 |
tggatttgtagccatttatttgttggtgcctgaaaccaaaggtcttcagtttgaggaggttgagaaattgcttcagaaagggtttagacctttcccattt |
9440653 |
T |
|
| Q |
401 |
aacaagaaaaagg |
413 |
Q |
| |
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||||||||||||| |
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| T |
9440652 |
aacaagaaaaagg |
9440640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 9452278 - 9451866
Alignment:
| Q |
1 |
ccgaggcatgtgtcgtgcacaaaatcgcgtatggttttctcaaggttgtccaagcagaattggaatccttgcagttgtaatccttggactatacataata |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9452278 |
ccgaggcatgtgtcgtgcacaaaaacgtgtatggttttcccaaggttgtccaagcagaattggaatccttgcagttgtaatccttggactatacatcata |
9452179 |
T |
|
| Q |
101 |
tcatatgctcctggaatcggaacagtgccgtgggttctaaactcggagatttatcctttaaggttcagaggaataggtggaggtatagcagcagtttgca |
200 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| || |
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| T |
9452178 |
gcatatgctcctggaattggaacagtgccttgggttctaaactcggagatttatccattgcggttcagaggaataggtggaggtatagcagcagttttca |
9452079 |
T |
|
| Q |
201 |
actggtgtgctaatttaattatgagtgagtcattcttaagcatgataaagactctaggaactactggaacattcctcacctttgcagggttctctttgat |
300 |
Q |
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|||||||||| ||| ||||| |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
9452078 |
actggtgtgccaatctaattgtgagtgagtcattcttgagcatgataaaggctctaggaactaccggaacattcctcctctttgcagggttctctttgat |
9451979 |
T |
|
| Q |
301 |
tggatttgtagccatttatttgttggtgcctgaaaccaaaggtcttcagtttgaagaggttgagaaattgcttcagaaagggtttagacctttcccattt |
400 |
Q |
| |
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||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9451978 |
tggccttgtagccatttatttgttagtgcctgaaaccaaaggccttcagtttgaggaggttgagaaattgcttcaaaaagggtttagacctttcccattt |
9451879 |
T |
|
| Q |
401 |
aacaagaaaaagg |
413 |
Q |
| |
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||||||||||||| |
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|
| T |
9451878 |
aacaagaaaaagg |
9451866 |
T |
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