View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19700_low_9 (Length: 428)
Name: NF19700_low_9
Description: NF19700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19700_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 21 - 418
Target Start/End: Complemental strand, 30246153 - 30245755
Alignment:
| Q |
21 |
ctacaatggaaaggatgctctccatttcctacattattatagttttaagaatacaaacatgacagtgtgacacctagcttagctctgcctctgccctcag |
120 |
Q |
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| T |
30246153 |
ctacaatggaacggatgatctccatttcctccattactatagttttaagaatacaaacatgacagtgtgacacctagcttagctctgcctctgccctcag |
30246054 |
T |
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| Q |
121 |
tttgattttgaacaagttcttgttgattaattccatgtgttcccttcttggcaagggttctacaataacttttccatgatacttattgcttattttgagc |
220 |
Q |
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| T |
30246053 |
tttaattttgaacaagttcttgttgattaattccatgtgttcccttcttggcaagggttctacaataacttttccatgatacttattgcttattttgagc |
30245954 |
T |
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| Q |
221 |
tgcccattttctctctataccaa-annnnnnnnnaaagcagcaaaacttcattagaataaataaacagacaaaagctcaagaattaattttgaatcagta |
319 |
Q |
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| T |
30245953 |
tgcccattttctatctataccaatttttttttttaaagcagcaaaacttcattagaataaataaacagacaaaagctcgagaattaattttgaatcagta |
30245854 |
T |
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| Q |
320 |
catcgcatcagaatatttcgcttatacttgcaagatatttcaagctgggtgcctgcccttgtaagacacaagaagtttcttaagtgagttgatcctatg |
418 |
Q |
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| T |
30245853 |
catcgcatcagaatatttcgcttatacttgcaagatatttcaaggtgggtgcctgcccttgtaagacacaagaattttcttaagtgagttgatcctatg |
30245755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 416
Target Start/End: Complemental strand, 30782869 - 30782777
Alignment:
| Q |
326 |
atcagaatatttcgcttatacttgcaagatatttcaagctgggtgc--ctgcccttgtaagacacaagaagtttcttaagtgagttgatccta |
416 |
Q |
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| T |
30782869 |
atcagaatatttcgcttatacttgcaagatatttcaaggtgggtgcctctgcccttgtaaaacacaacaattttcttaagggggttgatccta |
30782777 |
T |
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