View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19702_high_1 (Length: 893)

Name: NF19702_high_1
Description: NF19702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19702_high_1
NF19702_high_1
[»] chr2 (10 HSPs)
chr2 (20-514)||(16315363-16315864)
chr2 (27-519)||(12807740-12808232)
chr2 (95-519)||(32991072-32991496)
chr2 (225-277)||(31071629-31071681)
chr2 (212-262)||(36804155-36804205)
chr2 (212-256)||(18844486-18844530)
chr2 (212-255)||(18489051-18489094)
chr2 (214-253)||(35488082-35488121)
chr2 (212-262)||(36804370-36804420)
chr2 (212-253)||(8066082-8066123)
[»] chr8 (9 HSPs)
chr8 (101-385)||(9781257-9781542)
chr8 (596-645)||(37811377-37811426)
chr8 (212-263)||(32266805-32266856)
chr8 (212-263)||(7924629-7924680)
chr8 (212-251)||(12134571-12134610)
chr8 (212-263)||(13396631-13396682)
chr8 (212-263)||(41665215-41665266)
chr8 (212-263)||(172346-172397)
chr8 (212-263)||(8300046-8300097)
[»] chr3 (14 HSPs)
chr3 (21-167)||(7516736-7516882)
chr3 (602-645)||(17027-17070)
chr3 (212-263)||(2364520-2364571)
chr3 (212-263)||(7313019-7313070)
chr3 (212-263)||(10323417-10323468)
chr3 (212-259)||(19920079-19920126)
chr3 (232-314)||(25132368-25132450)
chr3 (212-263)||(34332661-34332712)
chr3 (211-256)||(9509996-9510041)
chr3 (211-256)||(9517971-9518016)
chr3 (232-293)||(17271498-17271559)
chr3 (212-277)||(17620293-17620358)
chr3 (212-253)||(18368811-18368852)
chr3 (211-264)||(44888146-44888199)
[»] chr5 (6 HSPs)
chr5 (207-274)||(23878387-23878454)
chr5 (212-263)||(23238627-23238678)
chr5 (212-263)||(27117007-27117058)
chr5 (212-263)||(30732160-30732211)
chr5 (212-263)||(42513963-42514014)
chr5 (212-263)||(12825442-12825493)
[»] chr4 (10 HSPs)
chr4 (179-296)||(35324178-35324295)
chr4 (596-645)||(42060268-42060317)
chr4 (212-263)||(23642437-23642488)
chr4 (212-264)||(15740464-15740516)
chr4 (211-262)||(4640526-4640577)
chr4 (212-263)||(19755510-19755561)
chr4 (212-263)||(19784245-19784296)
chr4 (212-263)||(47419047-47419098)
chr4 (212-314)||(29133109-29133211)
chr4 (212-277)||(28713150-28713215)
[»] scaffold0472 (1 HSPs)
scaffold0472 (212-263)||(3495-3546)
[»] chr7 (10 HSPs)
chr7 (19-127)||(43004031-43004139)
chr7 (212-263)||(4937974-4938025)
chr7 (212-263)||(11277098-11277149)
chr7 (212-255)||(11338990-11339033)
chr7 (211-262)||(22819564-22819615)
chr7 (212-263)||(29968217-29968268)
chr7 (212-274)||(28173811-28173873)
chr7 (213-263)||(37919788-37919838)
chr7 (212-253)||(18671413-18671454)
chr7 (209-314)||(27544408-27544513)
[»] scaffold0034 (1 HSPs)
scaffold0034 (212-263)||(105689-105740)
[»] chr6 (3 HSPs)
chr6 (212-263)||(21168442-21168493)
chr6 (212-256)||(26513967-26514011)
chr6 (214-253)||(9565612-9565651)
[»] chr1 (5 HSPs)
chr1 (212-263)||(6050846-6050897)
chr1 (212-263)||(11908951-11909002)
chr1 (211-264)||(22191626-22191679)
chr1 (212-256)||(26805204-26805248)
chr1 (212-263)||(35541292-35541343)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-117; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 20 - 514
Target Start/End: Complemental strand, 16315864 - 16315363
Alignment:
Q  20 ccaagcgaacacggaaaccttcaatggaacgtccttcctccaaagtattgccgatgggacatgcatagtggtggacggctctgatgtgagcactcaataa 119  Q
    |||||| |||| |||||||||||| ||||||||||||||||||||||  || | |||||||||||| ||||||| |||| | ||||||||||||| ||||    
T  16315864 ccaagcaaacatggaaaccttcaacggaacgtccttcctccaaagtaaagctgttgggacatgcatcgtggtgggcggcccagatgtgagcactcgataa 16315765  T
Q  120 gcaccacttacaatgtaaccaacgaccagatcagatgtccatctccaagaatcctcaagatcaacatgcaacaaaacatttaacaacatattcctacact 219  Q
    |||||||| ||| | || || ||||||||||||| |||||||||||||||| ||||||||||||| ||||||| || ||||| || ||||||||||||||    
T  16315764 gcaccactaacagtatatcccacgaccagatcaggtgtccatctccaagaaccctcaagatcaacctgcaacacaatatttagcagcatattcctacact 16315665  T
Q  220 cctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccccaagcaaacatttgtgccacagtctc 319  Q
    |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| || |||||||| |||  ||| ||||||||||| ||| || |    
T  16315664 cctctaccaaggcctcctcccacgcccacaacctactacgccagttccaagcctctcctccctcatcccagcccatagccaacatttgtgcaacaatcgc 16315565  T
Q  320 cattttataat-tgacaagtcaaacaaatggcgaaacctaacacaaagagggacctcacctacacacttatccaaccaataaagagagctaactctattt 418  Q
    ||||||||  | ||| |||||||||||| |||| ||||||| ||||||||| |||||||  || ||| ||||||||||| |||||||||||||||   ||    
T  16315564 cattttatcttctgataagtcaaacaaacggcggaacctaatacaaagaggtacctcactaacccacctatccaaccaaaaaagagagctaactccgctt 16315465  T
Q  419 ccaacactaagacgtaaattttcaggaaaccaactatccgacatcgcaccatcaccatcacggt------tactagctatcgtccttcaccacaccgacc 512  Q
    || ||| | ||||||||||||||| |||||||| ||  ||| | |||||||||||||||||  |      |||||||||||||| | |||||||||||||    
T  16315464 ccgacaatgagacgtaaattttcaagaaaccaaatactcgataccgcaccatcaccatcaccatctcaaatactagctatcgtcttccaccacaccgacc 16315365  T
Q  513 cc 514  Q
    ||    
T  16315364 cc 16315363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 27 - 519
Target Start/End: Complemental strand, 12808232 - 12807740
Alignment:
Q  27 aacacggaaaccttcaatggaacgtccttcctccaaagtattgccgatgggacatgcatagtggtggacggctctgatgtgagcactcaataagcaccac 126  Q
    |||||||||| ||||| ||||||||||||||| |||||||  |||  |||||||| |||| |||||| | ||   ||||||||||||  |||||||||||    
T  12808232 aacacggaaatcttcagtggaacgtccttccttcaaagtaaagccattgggacattcataatggtgggcagcctagatgtgagcacttgataagcaccac 12808133  T
Q  127 ttacaatgtaaccaacgaccagatcagatgtccatctccaagaatcctcaagatcaacatgcaacaaaacatttaacaacatattcctacactcctctac 226  Q
    | |   | || || |||||| ||||||  ||| |||||||||||||||||| |||||| ||||||| |||| ||| ||||||||||| ||||||||||||    
T  12808132 taatggtatatcccacgaccggatcaggcgtcaatctccaagaatcctcaatatcaacctgcaacacaacagttagcaacatattcccacactcctctac 12808033  T
Q  227 caaggcctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccccaagcaaacatttgtgccacagtctccatttta 326  Q
    ||| |||||||||||||||||||||||||||| |||||| ||||||||||| || |||||||| ||||||| |||||||||||| ||| || ||||||||    
T  12808032 caacgcctcctcccacgcccacaacctcctacaccacttccaagcctctcctccctcatcccagccccaaggaaacatttgtgcaacaatcgccatttta 12807933  T
Q  327 taat-tgacaagtcaaacaaatggcgaaacctaacacaaagagggacctcacctacacacttatccaaccaataaagagagctaactctatttccaacac 425  Q
    |  | ||| ||||||||||||  || ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| | ||| | ||||  |||     
T  12807932 ttttctgataagtcaaacaaacagcaaaacctaacacaatgagggacctcacctacccacttatccaaccaa-aaagagagatgactttgtttctgacaa 12807834  T
Q  426 taagacgtaaattttcaggaaaccaactatccgacatcgcaccatcaccatcacggttactagctatcgtccttcaccacaccgacccctcccg 519  Q
    | ||||||||||| | ||||||||||||| ||| || ||||||||||||||| ||| | |||||||||||||| |||| |||||||||||||||    
T  12807833 tgagacgtaaattgttaggaaaccaactacccgccaccgcaccatcaccatctcggatgctagctatcgtcctccaccgcaccgacccctcccg 12807740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 95 - 519
Target Start/End: Complemental strand, 32991496 - 32991072
Alignment:
Q  95 cggctctgatgtgagcactcaataagcaccacttacaatgtaaccaacgaccagatcagatgtccatctccaagaatcctcaagatcaacatgcaacaaa 194  Q
    |||| ||||||||||||| | |||||||||||| ||| ||||  | || |||  |||||  | ||||||||| |||||||||| | |||  ||||||| |    
T  32991496 cggccctgatgtgagcacactataagcaccactgacagtgtacacgacaaccgtatcaggagaccatctccaggaatcctcaacaacaatctgcaacaca 32991397  T
Q  195 acatttaacaacatattcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaacccc 294  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||| | ||| |||||||| |||||||| ||  | |||||| ||||||    
T  32991396 acatgtaacaacatattcctacactcctctaccaacgcctcctcccacacccacaatccccttcgccacttccaagcctccccttcctcatcctaacccc 32991297  T
Q  295 aagcaaacatttgtgccacagtctccatttta-taattgacaagtcaaacaaatggcgaaacctaacacaaagagggacctcacctacacacttatccaa 393  Q
    |||| ||| |||| || || ||| |||||||| |  |||| || ||| ||||| ||||||||||||||   | ||| ||| ||||||| ||| |||||||    
T  32991296 aagc-aacgtttgagcaacggtcgccattttattttttgataactcatacaaacggcgaaacctaacattcaaaggaaccacacctacccacctatccaa 32991198  T
Q  394 ccaataaagagagctaactctatttccaacactaagacgtaaattttcaggaaaccaactatccgacatcgcaccatcaccatcacggttactagctatc 493  Q
    |||| ||||||||||| | | ||| |||||| | ||||||||||| ||||||||| |||||   |||| |   ||||| ||||| ||  |  || |||||    
T  32991197 ccaaaaaagagagctagcaccattaccaacattgagacgtaaattgtcaggaaacaaactacttgacaccaagccatctccatctcgaatgttaactatc 32991098  T
Q  494 gtccttcaccacaccgacccctcccg 519  Q
    ||||| ||||||||||||| ||||||    
T  32991097 gtcctccaccacaccgacctctcccg 32991072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 31071681 - 31071629
Alignment:
Q  225 accaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctcc 277  Q
    |||||| ||||||||||  |||||||||||||||||||||| |||||||||||    
T  31071681 accaagtcctcctcccaatcccacaacctcctacgccacttccaagcctctcc 31071629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 36804155 - 36804205
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgcca 262  Q
    |||||||||||||| |||| |||||||||||||||||||||| | ||||||    
T  36804155 cctacactcctctaacaagtcctcctcccacgcccacaaccttcgacgcca 36804205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 18844530 - 18844486
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcct 256  Q
    |||||||||||| |||||  |||||||||||||||||||||||||    
T  18844530 cctacactcctccaccaactcctcctcccacgcccacaacctcct 18844486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 18489051 - 18489094
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcc 255  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||    
T  18489051 cctacactcctctactaattcctcctcccacgcccacaacctcc 18489094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 35488082 - 35488121
Alignment:
Q  214 tacactcctctaccaaggcctcctcccacgcccacaacct 253  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  35488082 tacactcctctagcaaagcctcctcccacgcccacaacct 35488121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 36804370 - 36804420
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgcca 262  Q
    |||||||||||||| |||| |||||||||||||| ||||||| | ||||||    
T  36804370 cctacactcctctaacaagtcctcctcccacgcctacaaccttcgacgcca 36804420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 8066123 - 8066082
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacct 253  Q
    |||||||||||||| ||  |||||||||||||||||||||||    
T  8066123 cctacactcctctagcatagcctcctcccacgcccacaacct 8066082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 101 - 385
Target Start/End: Complemental strand, 9781542 - 9781257
Alignment:
Q  101 tgatgtgagcactcaataagcaccacttacaatgtaaccaacgaccagatcagatgtccatctccaagaatcctcaagatcaacatgcaacaaaacattt 200  Q
    |||||||||||||| |||||||||||| ||| |||| || |||| | |||||| | |||| ||||| || ||||||  |||||| ||||  |||||||||    
T  9781542 tgatgtgagcactcgataagcaccactgacagtgtatcccacgatcggatcaggtatccaactccaggagtcctcagtatcaacctgcattaaaacattt 9781443  T
Q  201 aacaacatattcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccccaagcaa 300  Q
    | || |||||| |||||||| |||| |||  |||||||||| ||| |||| || ||||||||| |  ||||||| ||||| |||||||| |||||| |||    
T  9781442 agcagcatattgctacactcatctaacaaaccctcctcccatgcctacaatcttctacgccacctcaaagcctcaccaccctcatcccatccccaaacaa 9781343  T
Q  301 acatttgtgccacagtctccatttta-taattgacaagtcaaacaaatggcgaaacctaacacaaagagggacctcacctacacac 385  Q
    |||||||||| | |||| |||||||| |  ||||||| ||||||||| | |||||  |||||||||||||||||||||||| ||||    
T  9781342 acatttgtgctatagtcgccattttattttttgacaaatcaaacaaacgacgaaatttaacacaaagagggacctcacctatacac 9781257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 596 - 645
Target Start/End: Original strand, 37811377 - 37811426
Alignment:
Q  596 aaaaggaaacgtagctggttggtgttccgccatagccatcttcccaaaag 645  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  37811377 aaaaggaaacgtagctggttggttttccgccatagccatctttccaaaag 37811426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 32266805 - 32266856
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  32266805 cctacactcctctaccaactcctcctcccaggcccacaacctcctacgccac 32266856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 7924629 - 7924680
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  7924629 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 7924680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 12134571 - 12134610
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaac 251  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  12134571 cctacactcctctaccaagtcctcctcccacgcccacaac 12134610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 13396631 - 13396682
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  13396631 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 13396682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 41665266 - 41665215
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  41665266 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 41665215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 172346 - 172397
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||   ||||||||| |||||||||| ||||||||||    
T  172346 cctacactcctctaccaacttctcctcccaggcccacaaccgcctacgccac 172397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 8300046 - 8300097
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| || |||||||    
T  8300046 cctacactcctctaccaactcctcctcccaagcccacaaccgccgacgccac 8300097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 7516736 - 7516882
Alignment:
Q  21 caagcgaacacggaaaccttcaatggaacgtccttcctccaaagtattgccgatgggacatgcatagtggtggacggctctgatgtgagcactcaataag 120  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||  |  | ||||| |||||||||||||| |||| | ||  ||| |||||||||||    
T  7516736 caagcaaacacgaaaaccttcaatggaacgtccttcctccaaagtaaagttgttgggaaatgcatagtggtgggcggccccgacatgatcactcaataag 7516835  T
Q  121 caccacttacaatgtaaccaacgaccagatcagatgtccatctccaa 167  Q
    |||||||  || | || || |||||  |||||| |||||||||||||    
T  7516836 caccactggcagtatatcccacgactggatcaggtgtccatctccaa 7516882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 602 - 645
Target Start/End: Complemental strand, 17070 - 17027
Alignment:
Q  602 aaacgtagctggttggtgttccgccatagccatcttcccaaaag 645  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17070 aaacgtagctggttggtgttccgccatagccatcttcccaaaag 17027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 2364520 - 2364571
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  2364520 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 2364571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 7313019 - 7313070
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  7313019 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 7313070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 10323468 - 10323417
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  10323468 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 10323417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 19920126 - 19920079
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacg 259  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||||    
T  19920126 cctacactcctctaccaactcctcctcccaagcccacaacctcctacg 19920079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 232 - 314
Target Start/End: Original strand, 25132368 - 25132450
Alignment:
Q  232 cctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccccaag-caaacatttgtgccaca 314  Q
    ||||||||||| ||||||||||||| | ||| || ||||||||||| || ||||||| |||||||| |||||||||| ||||||    
T  25132368 cctcctcccacacccacaacctccttctccatttccaagcctctcctccctcatccc-accccaagtcaaacatttgagccaca 25132450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 34332712 - 34332661
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  34332712 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 34332661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 9509996 - 9510041
Alignment:
Q  211 tcctacactcctctaccaaggcctcctcccacgcccacaacctcct 256  Q
    ||||||||||| |||||||  |||||||||| ||||||||||||||    
T  9509996 tcctacactccgctaccaactcctcctcccatgcccacaacctcct 9510041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 9517971 - 9518016
Alignment:
Q  211 tcctacactcctctaccaaggcctcctcccacgcccacaacctcct 256  Q
    ||||||||||| |||||||  |||||||||| ||||||||||||||    
T  9517971 tcctacactccgctaccaactcctcctcccatgcccacaacctcct 9518016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 17271559 - 17271498
Alignment:
Q  232 cctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccc 293  Q
    |||||||||||| |||||||||||| | |||| | ||||| ||||||||| | |||||||||    
T  17271559 cctcctcccacgtccacaacctcctcctccacctccaagcatctccaccagcctcccaaccc 17271498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 17620293 - 17620358
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctcc 277  Q
    |||||||||  |||||||  ||| ||||||||||||||||||||| | |||||| || ||||||||    
T  17620293 cctacactctgctaccaactccttctcccacgcccacaacctcctcctccacttccacgcctctcc 17620358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 18368852 - 18368811
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacct 253  Q
    |||||||||||||| ||| |||||||||||| ||||||||||    
T  18368852 cctacactcctctagcaaagcctcctcccacacccacaacct 18368811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 44888146 - 44888199
Alignment:
Q  211 tcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccact 264  Q
    ||||||||||| ||| |||  |||||||||| |||||||||| |||||||||||    
T  44888146 tcctacactcccctaacaattcctcctcccatgcccacaaccgcctacgccact 44888199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 23878454 - 23878387
Alignment:
Q  207 atattcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctc 274  Q
    |||||||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  23878454 atattcctccactccactaccaaatcctcctcccacgcccacaacctcctacgccactttcaagcctc 23878387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 23238627 - 23238678
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||  |||||||||||||||||||||    
T  23238627 cctacactcctctaccaactcctcctccctggcccacaacctcctacgccac 23238678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 27117058 - 27117007
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  27117058 cctacactcctctaccaacccctcctcccaggcccacaaccgcctacgccac 27117007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 30732211 - 30732160
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  30732211 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 30732160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 42513963 - 42514014
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  42513963 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 42514014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 12825442 - 12825493
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||| ||||| |||||||||| ||||||||||    
T  12825442 cctacactcctctaccaactcctcatcccaagcccacaaccgcctacgccac 12825493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 179 - 296
Target Start/End: Complemental strand, 35324295 - 35324178
Alignment:
Q  179 atcaacatgcaacaaaacatttaacaacatattcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctcca 278  Q
    |||||| ||||| |||| || | ||||||||||| |||||| | |||||||  |||||||||| |||||||| |||||||||||||| ||| |||| ||     
T  35324295 atcaacctgcaataaaatatctgacaacatattcttacacttcactaccaaatcctcctcccaagcccacaatctcctacgccacttccaaacctcccct 35324196  T
Q  279 ccatcatcccaaccccaa 296  Q
    || |||||||| ||||||    
T  35324195 ccctcatcccacccccaa 35324178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 596 - 645
Target Start/End: Complemental strand, 42060317 - 42060268
Alignment:
Q  596 aaaaggaaacgtagctggttggtgttccgccatagccatcttcccaaaag 645  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42060317 aaaaggaaacatagctggttggtgttccgccatagccatcttcccaaaag 42060268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 23642488 - 23642437
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  23642488 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 23642437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 15740464 - 15740516
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccact 264  Q
    ||||||||||||||||||  |||||||||| |||||||||| |||| ||||||    
T  15740464 cctacactcctctaccaactcctcctcccaagcccacaaccgcctatgccact 15740516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 4640577 - 4640526
Alignment:
Q  211 tcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgcca 262  Q
    ||||||||||||||| |||| |||||||||| ||||||||||| | ||||||    
T  4640577 tcctacactcctctaacaagtcctcctcccaagcccacaaccttcgacgcca 4640526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 19755510 - 19755561
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||| | |||||||||| ||||||||||    
T  19755510 cctacactcctctaccaactcctcctcctaagcccacaaccgcctacgccac 19755561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 19784296 - 19784245
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||| | |||||||||| ||||||||||    
T  19784296 cctacactcctctaccaactcctcctcctaagcccacaaccgcctacgccac 19784245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 47419047 - 47419098
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    |||||||||||||||||   |||||||||| |||||||||| ||||||||||    
T  47419047 cctacactcctctaccacctcctcctcccaagcccacaaccgcctacgccac 47419098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 29133109 - 29133211
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccccaagcaaacatttgtgcc 311  Q
    ||||||||||| || |||  | ||||||||| |||| | |||||| |||||||| ||||| || |||||| ||||||| |||||   ||||||||| |||    
T  29133109 cctacactcctttaacaattcttcctcccacacccaaagcctcctccgccacttccaagcttccccaccaacatcccacccccattgaaacatttgcgcc 29133208  T
Q  312 aca 314  Q
    |||    
T  29133209 aca 29133211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 28713215 - 28713150
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctcc 277  Q
    |||||||||  |||||||  |||||||||||||||||| |||||| | |||||| || ||||||||    
T  28713215 cctacactctgctaccaactcctcctcccacgcccacagcctcctcctccacttccacgcctctcc 28713150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 3495 - 3546
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  3495 cctacactcctctaccaactcctcctcccaggcccacaacctcctacgccac 3546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 43004139 - 43004031
Alignment:
Q  19 gccaagcgaacacggaaaccttcaatggaacgtccttcctccaaagtattgccgatgggacatgcatagtggtggacggctctgatgtgagcactcaata 118  Q
    ||||||| || ||||| ||||| | | |||||||||||||||||||||  | || ||| |||||||||||||||| || | ||||||  |||| || |||    
T  43004139 gccaagcaaagacggagacctttagtagaacgtccttcctccaaagtaaagtcgttggaacatgcatagtggtgggcgcccctgatgcaagcattcgata 43004040  T
Q  119 agcaccact 127  Q
    |||||||||    
T  43004039 agcaccact 43004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 4938025 - 4937974
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  4938025 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 4937974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 11277149 - 11277098
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  11277149 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 11277098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 11338990 - 11339033
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcc 255  Q
    |||||||||||||||||   ||||||||||||||||||||||||    
T  11338990 cctacactcctctaccatttcctcctcccacgcccacaacctcc 11339033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 22819615 - 22819564
Alignment:
Q  211 tcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgcca 262  Q
    ||||||||||| ||| |||  |||||||||| ||||||||||||||||||||    
T  22819615 tcctacactcccctaacaactcctcctcccaggcccacaacctcctacgcca 22819564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 29968217 - 29968268
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  ||||||| || ||||| |||||||||||||||    
T  29968217 cctacactcctctaccaattcctcctctcaagcccataacctcctacgccac 29968268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 274
Target Start/End: Complemental strand, 28173873 - 28173811
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctc 274  Q
    |||||||||| |||||||  ||||||||||||||||||| ||||| | |||||| || |||||    
T  28173873 cctacactccgctaccaactcctcctcccacgcccacaatctcctcctccacttccacgcctc 28173811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 37919788 - 37919838
Alignment:
Q  213 ctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    |||||||||||||||||   ||||||||| |||||||||| ||||||||||    
T  37919788 ctacactcctctaccaacttctcctcccaagcccacaaccgcctacgccac 37919838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 18671413 - 18671454
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacct 253  Q
    |||||||||||||| ||| ||||||||||| |||||||||||    
T  18671413 cctacactcctctaacaaagcctcctcccatgcccacaacct 18671454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 27544513 - 27544408
Alignment:
Q  209 attcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccccaagcaaacatttgt 308  Q
    ||||||||||||| ||||||   |||||||||||||||| |  ||||| | |||||| |||||||| || || ||| | || |||| ||||||||| ||     
T  27544513 attcctacactccactaccatttcctcctcccacgcccatagtctccttctccacttccaagcctcccctccctcacctcaccccctagcaaacatctgc 27544414  T
Q  309 gccaca 314  Q
    ||||||    
T  27544413 gccaca 27544408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 105740 - 105689
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  105740 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 105689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 21168442 - 21168493
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  21168442 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 21168493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 26513967 - 26514011
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcct 256  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||    
T  26513967 cctacactcctctaccaactcctcctcccaagcccacaacctcct 26514011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 9565612 - 9565651
Alignment:
Q  214 tacactcctctaccaaggcctcctcccacgcccacaacct 253  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  9565612 tacactcctctagcaaagcctcctcccacgcccacaacct 9565651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 6050846 - 6050897
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  6050846 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 6050897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 11909002 - 11908951
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  11909002 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 11908951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 22191679 - 22191626
Alignment:
Q  211 tcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccact 264  Q
    ||||||||||| |||||||  |||||||||| |||||||||| |||||||||||    
T  22191679 tcctacactcccctaccaactcctcctcccatgcccacaaccgcctacgccact 22191626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 26805204 - 26805248
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcct 256  Q
    ||||||||||||||||| | ||||||||||||||||||| |||||    
T  26805204 cctacactcctctaccatgtcctcctcccacgcccacaatctcct 26805248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 35541292 - 35541343
Alignment:
Q  212 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 263  Q
    ||||||||||||||||||  |||||||||| |||||||||| || |||||||    
T  35541292 cctacactcctctaccaactcctcctcccaagcccacaaccgccgacgccac 35541343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University