View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19702_high_17 (Length: 230)
Name: NF19702_high_17
Description: NF19702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19702_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 48159096 - 48159293
Alignment:
| Q |
18 |
aaaatatattgttaacactttcatagggaataacagtcctgtttacattccttccnnnnnnncagtcccgtttatatattgttataatcctatcacattt |
117 |
Q |
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| T |
48159096 |
aaaatatattgttaacactttcatagggaataacagtcctgtttatattccttccaaaaaaacagtcccgtttatatattgttataatcctatcacattt |
48159195 |
T |
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| Q |
118 |
atacggaataacactcctgtttacgacatgtaaagcgcacccatatgtcaacttcacaatattcttgtttatattatcttaattgctgcctgcctatg |
215 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48159196 |
atacggaataacactcctgtttacgacatgtaacgcgcacctaaatgtcaacttcacaatattcttgtttatattatcttaattactgcctgcctatg |
48159293 |
T |
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