View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19702_high_4 (Length: 465)
Name: NF19702_high_4
Description: NF19702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19702_high_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 465
Target Start/End: Complemental strand, 39300099 - 39299660
Alignment:
| Q |
11 |
catcatcatgctgctgctaccaaccttggacacaaacaaggttttcagtctcactctgatcaaaatgtgaaacagagtgagagggatcgtcatcatgcta |
110 |
Q |
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| T |
39300099 |
catcatcatgctgctgctacgaaccttggtcacaagcaaggttttcagtctcactctgatcaaaatgtgaaacagagtgagagggatcgtcatcatgcta |
39300000 |
T |
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| Q |
111 |
caaatgtagttggacacagacaaggtgcagaaggcatgaaagaaagaggtgaaggtttgggagatattggtggaagaggannnnnnnnnnnnnnccatga |
210 |
Q |
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| T |
39299999 |
caaatgtagttggacacagacaaggtgcagaaggcatgaaagaaagaggtgaaggtttgggagatattggtggaagaggaagagaaagagagagccatga |
39299900 |
T |
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| Q |
211 |
acttggttcaaactttcagtctcttcctgatcgtaacgagaatcaaagttaccttgatcgtgcacatgttcgtgatagtgcaaatgtagcaggaaacaga |
310 |
Q |
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| T |
39299899 |
acttggttcaaactttcagtctcttcctgatcgtaacgagaatcaaagttaccttgatcgtgcacatgttcgtgatagtgcaaatgtagca--------- |
39299809 |
T |
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| Q |
311 |
gtaggtggaaaagaagattttggtggttttcgtgatgtgggaaagtttcaaatggaatcaaaaggtttaacagatgatagagaaaaacttgatagccgaa |
410 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39299808 |
------ggaaaagaagattttggtggtgttcgtgatgtgggaaagtttcaaatggaatcaaaaggtttaaccgatgatagagaaaaacttgatagccgaa |
39299715 |
T |
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| Q |
411 |
ccaaagtggtttctggaacaccacatgtgaaagaaatgaacagaggaatgggaac |
465 |
Q |
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| T |
39299714 |
ccaaagtggtttctggaacaccacatgtgaaagaaatgaacagaggaatgggaac |
39299660 |
T |
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