View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19702_high_7 (Length: 433)
Name: NF19702_high_7
Description: NF19702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19702_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 5 - 417
Target Start/End: Complemental strand, 7293867 - 7293455
Alignment:
| Q |
5 |
caacatatcaatgattacattgaaaataattggtaatttgtaatgtctcgcgccgtgctaaacattttctttttatgtcattatagggaaagggaatttc |
104 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7293867 |
caacatatcaatgattgcattgaaaataattggtaatttgtaatgtctcgcgccgtgctaaacattttctttttatgtcattatagggaaagggaatttc |
7293768 |
T |
|
| Q |
105 |
tataacaaaacatataagagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattgcagatctgggttgttcttgtggacaa |
204 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7293767 |
tttaacaaaacatataagagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattgcagatctgggttgttcttgtggacaa |
7293668 |
T |
|
| Q |
205 |
aacactttgtctgtggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatgcatctcccgaatacaagatattttttaacgatc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7293667 |
aacactttgtctgtggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatgcatctcccgaatacaagatcttttttaacgatc |
7293568 |
T |
|
| Q |
305 |
tttcaaggaatgacttcaacaacatttttaagtcacttgatagctttaaacatcaactacttgatgaaatcaaaactgaaatgagcccttgctacttctt |
404 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7293567 |
tttcagggaatgacttcaacaacatttttaagtcacttgatagctttaaacataaactacttgatgaaatcaaaactgaaatgagcccttgctacttctt |
7293468 |
T |
|
| Q |
405 |
tggtgttcctggt |
417 |
Q |
| |
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||||||||||||| |
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| T |
7293467 |
tggtgttcctggt |
7293455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 118 - 417
Target Start/End: Complemental strand, 7298228 - 7297929
Alignment:
| Q |
118 |
ataagagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattgcagatctgggttgttcttgtggacaaaacactttgtctg |
217 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||| |||||| || ||||||||||||||||||| | |||||||||| ||||| ||||||||||| || |
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| T |
7298228 |
ataagagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctggaccaaacactttgtttg |
7298129 |
T |
|
| Q |
218 |
tggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatgcatctcccgaatacaagatattttttaacgatctttcaaggaatga |
317 |
Q |
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|||| ||||| || ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||| ||| |||| | ||||| |
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| T |
7298128 |
tggtatcagatattatcatggttgtggagaagctttgccaacaattgaaccattcatctcccgagtacaagatattttttaatgatgtttctggaaatga |
7298029 |
T |
|
| Q |
318 |
cttcaacaacatttttaagtcacttgatagctttaaacatcaactacttgatgaaatcaaaactgaaatgagcccttgctacttctttggtgttcctggt |
417 |
Q |
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| T |
7298028 |
cttcaacaacatatttaagtcacttgacaactttaaagagaaactgcaagatgaaatcaaaactaaaatgagttcttgctacttttttggggttcctggt |
7297929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 288
Target Start/End: Complemental strand, 32709953 - 32709837
Alignment:
| Q |
172 |
gcaattgcagatctgggttgttcttgtggacaaaacactttgtctgtggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatg |
271 |
Q |
| |
|
||||||||||| ||||||| |||| ||| | ||||||||||| ||||| |||||| | |||| ||| ||||| |||||||| | | | ||||| ||| |
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| T |
32709953 |
gcaattgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatg |
32709854 |
T |
|
| Q |
272 |
catctcccgaatacaag |
288 |
Q |
| |
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|||||||||||||||| |
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| T |
32709853 |
aatctcccgaatacaag |
32709837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 32704261 - 32704201
Alignment:
| Q |
154 |
acacttcccagaagccttgcaattgcagatctgggttgttcttgtggacaaaacactttgt |
214 |
Q |
| |
|
||||| |||| |||| | |||||||||||| ||||||| |||| ||||| ||||||||||| |
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|
| T |
32704261 |
acactccccataagcttggcaattgcagatttgggttgctcttatggaccaaacactttgt |
32704201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 121 - 416
Target Start/End: Complemental strand, 5811711 - 5811416
Alignment:
| Q |
121 |
agagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattgcagatctgggttgttcttgtggacaaaacactttgtctgtgg |
220 |
Q |
| |
|
||||| ||||| ||||| || || |||| || ||||||||| |||||| | ||||||||||| ||||||| |||| ||||| ||||||||| | ||| |
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| T |
5811711 |
agagacgaagctataaccagtctatactgcaacacacttcctagaagcttggcaattgcagacttgggttgctcttttggaccaaacactttcttggtga |
5811612 |
T |
|
| Q |
221 |
tgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatgcatctcccgaatacaagatattttttaacgatctttcaaggaatgactt |
320 |
Q |
| |
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| || ||||| |||| |||||| || |||||||| | | || | || || |||||||||||| || | ||||| |||||||| | | ||||| || |
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| T |
5811611 |
tctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgattt |
5811512 |
T |
|
| Q |
321 |
caacaacatttttaagtcacttgatagctttaaacatcaactacttgatgaaatcaaaactgaaatgagcccttgctacttctttggtgttcctgg |
416 |
Q |
| |
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|||| || | |||| ||| ||||| | ||| ||| | |||||| | ||||||| ||||||||||| | ||||||||||||| |||||||||||| |
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| T |
5811511 |
caacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatgggtccttgctacttctctggtgttcctgg |
5811416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 27737051 - 27736916
Alignment:
| Q |
100 |
atttctataacaaaacatataagagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattgcagatctgggttgttcttgtg |
199 |
Q |
| |
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|||||| ||||||||| | | ||||| ||||| ||||| | ||| || | || |||||||||||||||| | ||||||||||| ||||||| |||| || |
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| T |
27737051 |
atttctttaacaaaacctttgagagacgaagctataaccaacctatattgcaacacacttcccagaagcttggcaattgcagacttgggttgctcttttg |
27736952 |
T |
|
| Q |
200 |
gacaaaacactttgtctgtggtgtcagaaatcatca |
235 |
Q |
| |
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| | ||||||| ||| ||| | |||||||| |||| |
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|
| T |
27736951 |
ggccaaacactatgttggtgatatcagaaattatca |
27736916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 417
Target Start/End: Complemental strand, 27736838 - 27736734
Alignment:
| Q |
313 |
aatgacttcaacaacatttttaagtcacttgatagctttaaacatcaactacttgatgaaatcaaaactgaaatgagcccttgctacttctttggtgttc |
412 |
Q |
| |
|
||||||||||||||| | || ||||| ||||| | ||| ||| | |||||| ||||||||| ||||| |||| |||| |||||||||| ||| |||| |
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| T |
27736838 |
aatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaactacgtgatgaaatggaaactaaaataggcccgtgctacttctatggagttc |
27736739 |
T |
|
| Q |
413 |
ctggt |
417 |
Q |
| |
|
||||| |
|
|
| T |
27736738 |
ctggt |
27736734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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