View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19702_low_11 (Length: 387)
Name: NF19702_low_11
Description: NF19702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19702_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 433020 - 433365
Alignment:
| Q |
16 |
atgtgcagggtggagagcagaattctaatgtttggatattcattctttggtccaatgtaaagtttattaaaacccacaagaaaattgtttttctaacatg |
115 |
Q |
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| T |
433020 |
atgtgcagggtggagagcaaaattttaatgtttgagtattcattctttggcccaatgtaaagtttattaaaacctacaagaaaattgtttttctaacatg |
433119 |
T |
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| Q |
116 |
tgttttttccttaaaaacac---gaaaatacacttttgtcccactatacttaactattattggtttcaatctggcggtagt-------tgttgccttaaa |
205 |
Q |
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| T |
433120 |
tgcttttt-cttaaaaacacatggaaaatacacttttctcccactatagttgactagtattggtttcaatttggcggtagttaactactgttgccttaaa |
433218 |
T |
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| Q |
206 |
ttttaaaggtagtatattactgttgcgatatttctctaaatctagcaccgcaccgcacccctacctcatgttcatcatccatagcaagtataacgcagtc |
305 |
Q |
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| T |
433219 |
ttttaaaggtagtatattattgttgcgatatttctctaaatctagtactgcactgcacccct-cctcatat---tcatccatcgcaagtataacgctgtc |
433314 |
T |
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| Q |
306 |
ttaaacgatgtctgaatattcttgtcttgatttgtaccatttttcaaagat |
356 |
Q |
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| T |
433315 |
ttaaaggatgtctgaatattcttgtcttgatttgtaccatttttcaaagat |
433365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 372
Target Start/End: Original strand, 433380 - 433411
Alignment:
| Q |
341 |
accatttttcaaagatgtcaagtagtgataag |
372 |
Q |
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| T |
433380 |
accatttttcaaagatgtcaagtagtgataag |
433411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 124
Target Start/End: Original strand, 4629574 - 4629605
Alignment:
| Q |
93 |
aagaaaattgtttttctaacatgtgttttttc |
124 |
Q |
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| T |
4629574 |
aagaaaattgtttttctaacatgtgttttttc |
4629605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 35219020 - 35218984
Alignment:
| Q |
95 |
gaaaattgtttttctaacatgtgttttttccttaaaa |
131 |
Q |
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| T |
35219020 |
gaaaattgtttttctcacatgtgttttttcctaaaaa |
35218984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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