View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19702_low_12 (Length: 310)
Name: NF19702_low_12
Description: NF19702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19702_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 140 - 291
Target Start/End: Complemental strand, 937346 - 937199
Alignment:
| Q |
140 |
ggtgaataggtaatcagaaaatagataggttaatttgttgtttaaagagtgagggaaaatgtccctgtaaacataacataggtgacagagggacaatgcg |
239 |
Q |
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| T |
937346 |
ggtgaataggtaatgataaaatagataggttaatttgttgtttaaagagtgagggaaaatgtccccgtgaacataacataggtggctgagggacaatgcg |
937247 |
T |
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| Q |
240 |
tggggttcgaacctggataccccacccacttattcattttaaaaagtgaatt |
291 |
Q |
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| T |
937246 |
cggggttcgaacccggata----tcccacttattcactttaaaaagtgaatt |
937199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 937469 - 937421
Alignment:
| Q |
17 |
aagaaacacgtacaaccagctaatagtggttcttccatcttttgttttg |
65 |
Q |
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| T |
937469 |
aagaaacacgtacaaccagctaatagtggttcttccatcttttgttttg |
937421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 28709932 - 28709988
Alignment:
| Q |
143 |
gaataggtaatcagaaaatagataggttaatttgttgtttaaagagtgagggaaaat |
199 |
Q |
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| T |
28709932 |
gaataggtaatgaggaaataaataggttaattggttgcttaaagagtaatggaaaat |
28709988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 9733188 - 9733244
Alignment:
| Q |
143 |
gaataggtaatcagaaaatagataggttaatttgttgtttaaagagtgagggaaaat |
199 |
Q |
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| T |
9733188 |
gaataggtaatgagaaaatagatgggttgattagtcgtttaaagagtgagagaaaat |
9733244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 11508271 - 11508327
Alignment:
| Q |
143 |
gaataggtaatcagaaaatagataggttaatttgttgtttaaagagtgagggaaaat |
199 |
Q |
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| T |
11508271 |
gaataggtaatgagaaaatagatgggttggttagtcgtttaaagagtgagagaaaat |
11508327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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