View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19702_low_15 (Length: 244)
Name: NF19702_low_15
Description: NF19702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19702_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 39300315 - 39300091
Alignment:
| Q |
1 |
attcatgttgaaaaagacagagtcccaaagatgacaactcattttgaacaacttacagtggtagacaaggaaccaccacatggtagcattgaagcattac |
100 |
Q |
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| T |
39300315 |
attcatgttgaaaaagacagagtcccaaagatgactacccattttgaacaacttacagtggtagacaaggaaccaccacatggtagcattgaagcattac |
39300216 |
T |
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| Q |
101 |
aaggtggtgaaatgaacaaagatcatgcaggaaaagccattggagatattggtggaagaggaagatcaagagagactcatgaacttggttcaaatgtgaa |
200 |
Q |
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| T |
39300215 |
aaggtggtgaaatgaacaaagatcatgcaggaaaagccattggagatattggtggaagaggaagatcaagagagactcatgaacttggttcaaatgtgaa |
39300116 |
T |
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| Q |
201 |
gcagagtgatagggatcatcatcat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
39300115 |
gcagagtgatagggatcatcatcat |
39300091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 39299940 - 39299888
Alignment:
| Q |
142 |
ggagatattggtggaagaggaagatcaagagagactcatgaacttggttcaaa |
194 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
39299940 |
ggagatattggtggaagaggaagagaaagagagagccatgaacttggttcaaa |
39299888 |
T |
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