View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19702_low_3 (Length: 495)
Name: NF19702_low_3
Description: NF19702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19702_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 6e-63; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 18961214 - 18961356
Alignment:
| Q |
19 |
cctgattcatacaaagctgctattgtagcacaggtacaaatacctctcagagccatgcttaaattgaattccttttattttttctacattcacgaaattt |
118 |
Q |
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| T |
18961214 |
cctgattcatacaaagctgctattgtagcacaggtacaaatacctctcagagccatgcttaaattgaattccttttattttttctacattcacgaaattt |
18961313 |
T |
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| Q |
119 |
agtacaatagctaggacaatatgtcgtcggacaacagatataa |
161 |
Q |
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| T |
18961314 |
agtacattacctaggacaatatgtcgtcagacagcagctataa |
18961356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 245 - 482
Target Start/End: Original strand, 18961363 - 18961584
Alignment:
| Q |
245 |
ttctggtttcatttttgtgatatatatggttgtaacctggatttttc-gcataatcaactttcttttgccg--atgatttttcaggacaaggttagattg |
341 |
Q |
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| T |
18961363 |
ttctggtttcatttttgtgatatat--ggttgtaacctgaatttttttgcatgatgaactttcttttgctgcaatgattttgcaggacaaggatagattg |
18961460 |
T |
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| Q |
342 |
atggaattgctaacatatcctgaagttgaagaatcaattaagaggagagtggcgatgaaggccaagtggctataaatctgaaggatcaaacaactgatcc |
441 |
Q |
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| T |
18961461 |
atggaattgctaacatatcctgaagttgaagaatcaattaagagaag-----------------agtggctataaatctgaaggatcaaaaaactgatcc |
18961543 |
T |
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| Q |
442 |
tgtgtacaaaatcaatccaagcttggttgctgatttatata |
482 |
Q |
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| T |
18961544 |
tgtgtacaaaatcaatccaagcttggttgctgatttatata |
18961584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 222 - 482
Target Start/End: Complemental strand, 16245901 - 16245628
Alignment:
| Q |
222 |
caatctgtgattggtaaccctaattctggtttcatttttgtgatatatatggttgtaacctggatttttcgcataatcaactttcttttgccga--tgat |
319 |
Q |
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| T |
16245901 |
caatctgtgattgataacactgtttatggtttcatttttgtgatatat--ggttgt--cctggatttatcgcatgatcaaatttctttttccgcggtgat |
16245806 |
T |
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| Q |
320 |
ttttcaggacaaggttagattgatggaattgctaacatatcctgaagttgaagaatcaattaagaggagagtggcgatgaaggcc--------------- |
404 |
Q |
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| T |
16245805 |
tttgcaggacaaggataggttgatggaattgctaacatatcctgaagttgaagaatcaattaagaggagagtggcgatgaaggccaagacttatggacaa |
16245706 |
T |
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| Q |
405 |
-aagtggctataaatctgaaggatcaaacaactgatcctgtgtacaaaatcaatccaagcttggttgctgatttatata |
482 |
Q |
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| T |
16245705 |
gaagtggctataaatctgaaggatcaaaaaactgagcctgtgtacaaaat-aatcaaagcttgattgctgatttatata |
16245628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 482
Target Start/End: Original strand, 18979749 - 18979804
Alignment:
| Q |
427 |
tcaaacaactgatcctgtgtacaaaatcaatccaagcttggttgctgatttatata |
482 |
Q |
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| T |
18979749 |
tcaaaaaactgagtctgtgtacaaaatcaatccaatctaggttgctgatttatata |
18979804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 272 - 477
Target Start/End: Complemental strand, 4245411 - 4245183
Alignment:
| Q |
272 |
ggttgtaacctggatttttcgcataatcaact-----ttcttttgccg--atgatttttcaggacaaggttagattgatggaattgctaacatatcctga |
364 |
Q |
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| T |
4245411 |
ggttgtaacctggatttttcgcaaaatcaactcaactttcttttaccgcgatgattttgcaggacaaggataggttgatggaattgctaacttatcctga |
4245312 |
T |
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| Q |
365 |
agttgaagaatcaattaagaggagagtggcgatgaaggcc----------------aagtggctataaatctgaaggatcaaacaactgatcctgtgtac |
448 |
Q |
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| T |
4245311 |
agttgaagaatcgattaagaggagagtggcggtgaaggccaaaacttatggacaggaagtagctgtaaatctgaaagatcaaaaaaccgagcctgtctac |
4245212 |
T |
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| Q |
449 |
aaaatcaatccaagcttggttgctgattt |
477 |
Q |
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| T |
4245211 |
aaaatcaatccaagcttggttgctgattt |
4245183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 4246151 - 4246103
Alignment:
| Q |
19 |
cctgattcatacaaagctgctattgtagcacaggtacaaatacctctca |
67 |
Q |
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| T |
4246151 |
cctgattcttacaaagctgctattatagctcaggtacaaatacctctca |
4246103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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