View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19702_low_6 (Length: 447)
Name: NF19702_low_6
Description: NF19702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19702_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 426
Target Start/End: Complemental strand, 40929225 - 40928800
Alignment:
| Q |
10 |
ataatactcatacaatctagaaaactaacataataagctaatgataataaatattcaaacaaagttgatcctggtctccctcctggtaatttgctactcg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40929225 |
ataatactcatacaatctagaaaactaacataataagctaatgataataa-tattcaaacaaagttgatcctggtctccctcctggtaatttgctactcg |
40929127 |
T |
|
| Q |
110 |
tatttcctctgttggcatcagaacaaaggatgaatgatggattgtgagtttaggtcctcttctatatggctttggtggcggggtggtggtggtggctctt |
209 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40929126 |
tatttcctctggtggcatcagaacaaaggatgaatgatggattgtgagtttaggtcctcttctatatggctttggtggcggggtggtggtggtggctctt |
40929027 |
T |
|
| Q |
210 |
ctttgtccatctatagatagcaaaggaaaaatcaacctgaagacaattttgcagacataaacaattgtacacaaacacactccaagaaaaatacaattta |
309 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40929026 |
ctttgtccatctatagatagcaaaggcaaaatcaacctgaaaacaattttgcagacataaacaattgtacacaaacacactccaagaaaaatacaattta |
40928927 |
T |
|
| Q |
310 |
gacata----------atgtatatccaagtcaaactgtaattgagataatgtaattgaaatctagttgttataataaccaaaagggaaatatcaaaacca |
399 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40928926 |
tacataagcatttatcatgtatatccaagtcaaactgtaattgagataatgtaattgaaatccagttgttataataaccaaaagggaaatatcaaaacca |
40928827 |
T |
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| Q |
400 |
ttagcatcaaaacagagccaaaccata |
426 |
Q |
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| T |
40928826 |
ttagcatcaaaacagagccaaaccata |
40928800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 10 - 426
Target Start/End: Original strand, 48504539 - 48504965
Alignment:
| Q |
10 |
ataatactcatacaatctagaaaactaacataataagctaatgataataaatattcaaacaaagttgatcctggtctccctcctggtaatttgctactcg |
109 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||| |
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| T |
48504539 |
ataatactcatacaatctagagaactaacataataagctaatgataataa-tattcaaacaaatttgatcgtggtctccctcctggtaatttgcagctcg |
48504637 |
T |
|
| Q |
110 |
tatttcctct-gttggcatcagaacaaaggatgaatgatggattgtgagtttaggtcctcttctatatggctttggtggcggggtggtggtggtggctct |
208 |
Q |
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| T |
48504638 |
tatttcctcttggtggcatcagaacaaaggatgaatgatggattgtgagtttaggtcctcttctatatggctttggtggcggggtggtggtggaggctct |
48504737 |
T |
|
| Q |
209 |
tctttgtccatctatagatagcaaaggaaaaatcaacctgaagacaattttgcagacataaacaattgtacacaaacacactccaagaaaaatacaattt |
308 |
Q |
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| T |
48504738 |
tctttgtccatctatagatagcaaaggcaaaatcaacccgaaaacaattttgcagacataaacaattgtacacaaacacactccaagaaaaatacaattt |
48504837 |
T |
|
| Q |
309 |
agacata----------atgtatatccaagtcaaactgtaattgagataatgtaattgaaatctagttgttataataaccaaaagggaaatatcaaaacc |
398 |
Q |
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| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48504838 |
atacataagcatttatcatgtatatccaagtcaaactgtaattgagataatgtaattgaaatccagttgttataataaccaaaagggaaatatcaaaacc |
48504937 |
T |
|
| Q |
399 |
attagcatcaaaacagagccaaaccata |
426 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
48504938 |
attagcatcaaaacagagccaaaccata |
48504965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 19286460 - 19286511
Alignment:
| Q |
122 |
tggcatcagaacaaaggatgaatgatggattgtgagtttaggtcctcttcta |
173 |
Q |
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||||||| |||||||||| |||||||||||||| | | |||||||||||||| |
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| T |
19286460 |
tggcatcggaacaaaggaagaatgatggattgttattctaggtcctcttcta |
19286511 |
T |
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