View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19702_low_8 (Length: 427)

Name: NF19702_low_8
Description: NF19702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19702_low_8
NF19702_low_8
[»] scaffold0006 (1 HSPs)
scaffold0006 (180-289)||(159134-159243)
[»] chr2 (3 HSPs)
chr2 (237-305)||(29735712-29735781)
chr2 (257-313)||(39792078-39792134)
chr2 (255-288)||(3856035-3856068)
[»] chr7 (3 HSPs)
chr7 (154-288)||(28198005-28198139)
chr7 (159-283)||(46578956-46579080)
chr7 (258-310)||(4073999-4074051)
[»] chr1 (3 HSPs)
chr1 (227-288)||(17630315-17630377)
chr1 (156-283)||(1905738-1905864)
chr1 (256-312)||(34040804-34040860)
[»] chr6 (1 HSPs)
chr6 (269-312)||(8645561-8645604)
[»] chr4 (1 HSPs)
chr4 (188-285)||(39946394-39946491)
[»] scaffold0066 (1 HSPs)
scaffold0066 (255-283)||(34419-34447)


Alignment Details
Target: scaffold0006 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 159243 - 159134
Alignment:
Q  180 aagaaactttttattgacactttatgttttcaccacgttgaaaatccaaaataaaactttttctatatgaatttg-taaattatttcctcttttaaatcc 278  Q
    ||||||||||||||||| ||||| |||||||||||| |||||||| |||||| |||| |||| || ||||| ||  |||||||||| || |||| |||||    
T  159243 aagaaactttttattgaaacttt-tgttttcaccacattgaaaattcaaaattaaacattttttagatgaaattcataaattattttcttttttgaatcc 159145  T
Q  279 ttaacaagtgt 289  Q
    |||||||||||    
T  159144 ttaacaagtgt 159134  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 29735781 - 29735712
Alignment:
Q  237 tttttctatatgaa-tttgtaaattatttcctcttttaaatccttaacaagtgttataaagacatttgtt 305  Q
    ||||||||||| || ||| ||||||||||||||||||||||| |||||||||| | ||||||||||||||    
T  29735781 tttttctatataaaatttataaattatttcctcttttaaatcattaacaagtgctctaaagacatttgtt 29735712  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 39792078 - 39792134
Alignment:
Q  257 aattatttcctcttttaaatccttaacaagtgttataaagacatttgttagcataat 313  Q
    ||||||||| | |||| ||| ||||||||||||  ||||||||||||||||||||||    
T  39792078 aattatttctttttttgaattcttaacaagtgtcctaaagacatttgttagcataat 39792134  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 3856035 - 3856068
Alignment:
Q  255 taaattatttcctcttttaaatccttaacaagtg 288  Q
    |||||||||||||||||||||| |||||||||||    
T  3856035 taaattatttcctcttttaaatacttaacaagtg 3856068  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 288
Target Start/End: Complemental strand, 28198139 - 28198005
Alignment:
Q  154 aagggcacttgtttagaaatcaacagaagaaactttttattgacactttatgttttcaccacgttgaaaatccaaaataaaactttttctatatgaattt 253  Q
    |||||||||||||||||| || | |||||||||||||| |||  | ||  ||| ||||  || |||||| | |||||  |||||||||||| || |||||    
T  28198139 aagggcacttgtttagaagtccaaagaagaaactttttcttggaaattg-tgtattcaagacattgaaacttcaaaaagaaactttttctacataaattt 28198041  T
Q  254 g-taaattatttcctcttttaaatccttaacaagtg 288  Q
      |||||||||||||||||| |||||||||||||||    
T  28198040 tataaattatttcctcttttgaatccttaacaagtg 28198005  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 283
Target Start/End: Original strand, 46578956 - 46579080
Alignment:
Q  159 cacttgtttagaaatcaacagaagaaactttttattgacactttatgttttcaccacgttgaaaatccaaaataaaactttttctatatgaatttg-taa 257  Q
    ||||||||||||| |  | ||||||||||||||||| | | ||| ||||||||| || ||||||||  ||||| |||| ||||||  ||||| ||  |||    
T  46578956 cacttgtttagaagtttaaagaagaaactttttattaaaa-tttgtgttttcactacattgaaaattaaaaatgaaacattttctccatgaaattcataa 46579054  T
Q  258 attatttcctcttttaaatccttaac 283  Q
    |||||||||| |||||||||||||||    
T  46579055 attatttcctattttaaatccttaac 46579080  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 4074051 - 4073999
Alignment:
Q  258 attatttcctcttttaaatccttaacaagtgttataaagacatttgttagcat 310  Q
    ||||||| ||||||||||| || |||||||||| ||| || ||||||||||||    
T  4074051 attattttctcttttaaattctcaacaagtgttttaaggatatttgttagcat 4073999  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 17630315 - 17630377
Alignment:
Q  227 aaaataaaactttttctatatgaa-tttgtaaattatttcctcttttaaatccttaacaagtg 288  Q
    |||| ||||||||||||| || || ||| ||||||||||||||||||||||||||||||||||    
T  17630315 aaaaaaaaactttttctacataaaatttataaattatttcctcttttaaatccttaacaagtg 17630377  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 283
Target Start/End: Complemental strand, 1905864 - 1905738
Alignment:
Q  156 gggcacttgtttagaaatcaacagaagaaactttttattgacactttatgttttcaccacgttgaaaatccaaaataaaactttttctatatgaatttg- 254  Q
    |||||||||||||||| || | |||||||| |||||||||  ||||  ||||||||| || ||||||||  ||||| ||||  |||||| ||||| ||      
T  1905864 gggcacttgtttagaagtccaaagaagaaa-tttttattggaacttg-tgttttcactacattgaaaataaaaaatgaaacactttctacatgaaattca 1905767  T
Q  255 taaattatttcctcttttaaatccttaac 283  Q
    |||||||||||||||||| ||||||||||    
T  1905766 taaattatttcctcttttgaatccttaac 1905738  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 34040804 - 34040860
Alignment:
Q  256 aaattatttcctcttttaaatccttaacaagtgttataaagacatttgttagcataa 312  Q
    |||| ||||||||||||||||| ||||||||||| || || ||| || |||||||||    
T  34040804 aaataatttcctcttttaaatctttaacaagtgtcattaatacacttattagcataa 34040860  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 8645604 - 8645561
Alignment:
Q  269 ttttaaatccttaacaagtgttataaagacatttgttagcataa 312  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  8645604 ttttaaatccttaacaagtgttataaaggcatttgttaacataa 8645561  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 39946394 - 39946491
Alignment:
Q  188 ttttattgacactttatgttttcaccacgttgaaaatccaaaataaaactttttctatatgaatttg-taaattatttcctcttttaaatccttaacaa 285  Q
    ||||||||| |||| ||||||||||||| ||||||||  ||||| |||| || | || ||||| ||  ||||||||||||||||||  |||||||||||    
T  39946394 ttttattgaaactt-atgttttcaccacattgaaaatttaaaatgaaaccttctttacatgaaattcataaattatttcctcttttgcatccttaacaa 39946491  T

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Target: scaffold0066 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 34419 - 34447
Alignment:
Q  255 taaattatttcctcttttaaatccttaac 283  Q
    |||||||||||||||||||||||||||||    
T  34419 taaattatttcctcttttaaatccttaac 34447  T

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