View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19704_high_11 (Length: 293)

Name: NF19704_high_11
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19704_high_11
NF19704_high_11
[»] chr1 (1 HSPs)
chr1 (1-293)||(46633464-46633756)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 46633756 - 46633464
Alignment:
Q  1 acagaattatgaatagtttatatgcctcaagatacattctataagaaattttcattagagtggcagtaccaataccactttgtatggatgtcactaacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46633756 acagaattatgaatagtttatatgcctcaagatacattctataagaaattttctttagagtggcagtaccaataccactttgtatggatgtcactaacat 46633657  T
Q  101 gcggtactagcactcatgataaaatcatgaaaatttctgtcaacaaaatgtaccagtataggtactttagtgttttgtagtgcacttgttagtagttagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46633656 gcggtactagcactcatgataaaatcatgaaaatttctgtcaacaaaatgtaccagtataggtactttagtgttttgtagtgcacttgttagtagttagc 46633557  T
Q  201 ttcaactataggtactaagtgttgacattttgacatcaattaacatgtggatgtggtccttgccctcttgaagaatatttgtcaactagtgat 293  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46633556 ttcaactataggtactaagtattgacattttgacatcaattaacatgtggatgtggtccttgccctcttgaagaatatttgtcaactagtgat 46633464  T

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