View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19704_high_12 (Length: 267)
Name: NF19704_high_12
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19704_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 35183721 - 35183488
Alignment:
| Q |
19 |
ggtgtaccagaatgcctttgttctactccagaataaattcaaacatgacccaaataaggttattggatgggtgggagctatggaaagtttggctaaatta |
118 |
Q |
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| T |
35183721 |
ggtgtaccagaatgcctttgttctactccagaataaattcaaacatgacccaaataaggttatgagatgggtgggagctatggaaagtttggctaaatta |
35183622 |
T |
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| Q |
119 |
gtcggttgggatgttaggaacaagtaagtgttaagtctattctcttgaattattttacattcatgacatgactttgtggtgttcaattgagttttcttgt |
218 |
Q |
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| T |
35183621 |
gtcggttgggatgttaggaacaagtaagtgttaagtctattctcttgaattattttacattcatgacatgactttgtggtgttcaattgagttttcttgt |
35183522 |
T |
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| Q |
219 |
gcagcaaactactttacaaatcaagcctgtatat |
252 |
Q |
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| T |
35183521 |
gcagcaaactactttacaaatcaagcctgtatat |
35183488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 35177625 - 35177494
Alignment:
| Q |
117 |
tagtcggttgggatgttaggaacaagtaagtgttaagtctattctcttgaattattttacattcatgacatgactttgtggtgttcaattgagttttctt |
216 |
Q |
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| T |
35177625 |
tagttggttgggatgttaggaacaagtaagtgctattgatattctctttgggttttttacattctcgacatgaatttctggtgttcaattgagttttcct |
35177526 |
T |
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| Q |
217 |
gtgcagcaaactactttacaaatcaagcctgt |
248 |
Q |
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| T |
35177525 |
ttgcagcaaactattttacaaatcaagtctgt |
35177494 |
T |
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