View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19704_high_15 (Length: 246)
Name: NF19704_high_15
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19704_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 46633305 - 46633487
Alignment:
| Q |
49 |
cttcttatattcattgtttgtactgtctgtgaattacatttgtgtgaaggatttgtaatggttttttgtcatgtataaatgttaccaagttagatatatt |
148 |
Q |
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| T |
46633305 |
cttcttatattcattgtttgtactgtctgtgaattacatttgtgtgaaggatttgtaatggttttttgtcatgtataaatgttaccaagttagatatatt |
46633404 |
T |
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| Q |
149 |
tcagaacagcactgttttactaaagagttgtttattattttctttgatgatttacttagtccatcactagttgacaaatattcttc |
234 |
Q |
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| T |
46633405 |
tcagaacagcactgttttactaaagagttgt---ttattttctttgatgatttacttagtccatcactagttgacaaatattcttc |
46633487 |
T |
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