View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19704_high_3 (Length: 593)
Name: NF19704_high_3
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19704_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 18 - 575
Target Start/End: Complemental strand, 2007359 - 2006800
Alignment:
| Q |
18 |
gaacgatgggaaaaacataatgctgcagagttttgcgcgagatgcttaactgaaaaataataggcaatgattaaaagtattttggcagcaaaaaagaaaa |
117 |
Q |
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| T |
2007359 |
gaacgatgggaaaagcataatgctgcagagttttgcacgagatgcttaactgaaaaataataggcaatgattaaaagtattttggcagcaaaaaagaaaa |
2007260 |
T |
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| Q |
118 |
cacgttctaactatgcctatcacacaacaaatcctcaatgcccagtggattacagtcactgtactaaataaaactagcacaaaacaaagtaacttcaaca |
217 |
Q |
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| T |
2007259 |
cacgttctaactatgcctatcacacaacaaatcctcaatgcccagtggattacagtcactgtactaattaaaactagcacaaaacaaagtaacttcaaca |
2007160 |
T |
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| Q |
218 |
atagtgatgcattcaaaagcaattcctttctttctctctaattttcatgtctataggaaacaatcgaaaaggttacataaataagaaaagaaaaggacaa |
317 |
Q |
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| T |
2007159 |
atagtgatgcattcaaaagcaattcctttctttctctctaattttcatttctataggaaacaatcgaaaaggttacataaataagaaaagaaaaggacaa |
2007060 |
T |
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| Q |
318 |
agagctaggaggagttatatgaaaaggttacataaataaaatccagaagagttaacagagtctagatccattaaacattcaaaatattccatttccattc |
417 |
Q |
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| T |
2007059 |
agagctaggaggagttatatgaaaaggttacataaataaaatccagaagagtcaacagagtctagatccattaaacattcaaaatattccatttccatcc |
2006960 |
T |
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| Q |
418 |
acataattccctagcagctatcaaaattattttatcttgcagcagccgcagtttgcattgaaacgatcacgattataattaactatcctaactgcacttg |
517 |
Q |
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| T |
2006959 |
acataattccctagcagctatcaaaattattttatcttgcagcagccgcagtttgcattgaaacgatcacgattataattaactatcctaactgcacttg |
2006860 |
T |
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| Q |
518 |
tgatcacaaacataacagaaagaaaatcataaagaagcctcca--agtcttcgacctacg |
575 |
Q |
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| T |
2006859 |
tgatcacaaacataacagaaagaaaatcataaagaagcctccaagagtcttcgacctacg |
2006800 |
T |
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