View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19704_high_6 (Length: 398)
Name: NF19704_high_6
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19704_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 381
Target Start/End: Original strand, 43659487 - 43659855
Alignment:
| Q |
10 |
aagaaaattgagatcaaccaacttccatagttaatatattttattaaacttaaatggatgaatataattaagattgcatggatgaatacaattcaaagtt |
109 |
Q |
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| T |
43659487 |
aagaaaattgagatcaaccaacttccatagttaatatatttta---aacttaaatggatgaatataattaagattgcatggatgaatacaattcaaagtt |
43659583 |
T |
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| Q |
110 |
aggagttggtttttatattaagtgtaacacatccatacaagttaaaagaacatgaatatataaaacttctttataaattcatttaaggctttatcttttt |
209 |
Q |
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| T |
43659584 |
aggacttggtttttatattaagtgtaacacatccatacaagttaaaagaacatgaatatataaaacttctttataaattcatttaaggctttatcttttt |
43659683 |
T |
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| Q |
210 |
caacatagaactttggtttttcccgatacatccttcacactcatcactattgaatttgatgcatgaatattgagaaactgattagttctgaattaactca |
309 |
Q |
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| T |
43659684 |
caacatagaactttggtttttcccaatacatccctcacactcatcactattgaatttgatgcatgaatattgagaaactgattagttctgaattaactca |
43659783 |
T |
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| Q |
310 |
attgtattccactttaatggtgatcaatatacaataatgaatgaagtacaatgtatatacaagtcaaggtta |
381 |
Q |
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| T |
43659784 |
attgtattccactttaatggtgatcaatatacaataatgaatgaagtacaatgtatatacaagtcaaggtta |
43659855 |
T |
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