View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19704_high_8 (Length: 369)
Name: NF19704_high_8
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19704_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 47957691 - 47957330
Alignment:
| Q |
1 |
aggactggtaaatgagaaacgtccaagggtgtataaaaatgtcaaaaattatggtgatattaactataggtgctatcaagaggggaaaattgcacttgat |
100 |
Q |
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| T |
47957691 |
aggactggtaaatgagaaacgtccaagggtgtataaaaatgtcaaaaattatggtgatattaactataggtgctatcaagaggggaaaattgcacttgat |
47957592 |
T |
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| Q |
101 |
actgtcaaaatgacagataactagctatgatcatcataaagtgagaccatttcacatttaaattcctaatggtttttgttgttaaaatacacattaatat |
200 |
Q |
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| T |
47957591 |
actgtcaaaatgacagataactagctatgatcatcataa-gtgagaccatttcacatttaaattcctaatggtttttgttgttaaaatacacattaatat |
47957493 |
T |
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| Q |
201 |
ttggattcttaggtcgaattatgaaaaacaaatacatgaatggtttagttgtcatgatgaaatcaccagtcaaatttatatttcaatttcaattaagatt |
300 |
Q |
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| T |
47957492 |
ttggattcttaggtcgaattatgaaaaacaaatacatgaatggtttagttgtcatgatgaaatcaccagtcaaatttatatttcaatttcaat------t |
47957399 |
T |
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| Q |
301 |
aaggtgcctatagtgaccatagactcatagtccataatgacctctaattattctaaacatataaaagtt |
369 |
Q |
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| T |
47957398 |
aaggtgcctatagtgaccatagactcatagtccataatgacctctaattattctaaacatataaaagtt |
47957330 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 48944611 - 48944579
Alignment:
| Q |
139 |
aagtgagaccatttcacatttaaattcctaatg |
171 |
Q |
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| T |
48944611 |
aagtgagaccatttcacatttaaattcctaatg |
48944579 |
T |
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